View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3983_low_14 (Length: 247)

Name: NF3983_low_14
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3983_low_14
NF3983_low_14
[»] scaffold0035 (1 HSPs)
scaffold0035 (128-237)||(35084-35193)
[»] chr6 (7 HSPs)
chr6 (128-237)||(33045422-33045531)
chr6 (128-236)||(10092533-10092641)
chr6 (128-237)||(8976425-8976534)
chr6 (128-219)||(3065719-3065809)
chr6 (128-183)||(30908414-30908469)
chr6 (132-183)||(16246727-16246778)
chr6 (128-182)||(4660222-4660275)
[»] chr5 (7 HSPs)
chr5 (128-237)||(22009519-22009628)
chr5 (128-237)||(9043823-9043932)
chr5 (128-237)||(30442538-30442647)
chr5 (128-237)||(7473480-7473589)
chr5 (128-192)||(26841000-26841064)
chr5 (128-183)||(19085422-19085477)
chr5 (128-237)||(22004448-22004556)
[»] chr3 (11 HSPs)
chr3 (130-237)||(31685100-31685207)
chr3 (128-237)||(17681788-17681896)
chr3 (128-236)||(37982370-37982478)
chr3 (128-237)||(19882102-19882211)
chr3 (128-237)||(53973277-53973386)
chr3 (130-237)||(2549960-2550066)
chr3 (128-237)||(12538627-12538735)
chr3 (130-237)||(24761889-24761996)
chr3 (130-237)||(24815938-24816045)
chr3 (130-237)||(53352752-53352859)
chr3 (130-237)||(53027743-53027850)
[»] scaffold0096 (1 HSPs)
scaffold0096 (128-237)||(27431-27539)
[»] scaffold0045 (1 HSPs)
scaffold0045 (128-237)||(11625-11734)
[»] chr8 (6 HSPs)
chr8 (128-237)||(5657792-5657901)
chr8 (128-237)||(14678012-14678121)
chr8 (128-237)||(31100863-31100972)
chr8 (128-237)||(27541550-27541658)
chr8 (130-182)||(24788079-24788131)
chr8 (128-182)||(23738678-23738731)
[»] chr7 (5 HSPs)
chr7 (128-237)||(1262109-1262218)
chr7 (128-237)||(43071373-43071482)
chr7 (128-237)||(48849798-48849907)
chr7 (128-237)||(26909972-26910081)
chr7 (128-183)||(22007361-22007416)
[»] chr2 (5 HSPs)
chr2 (128-237)||(23348971-23349080)
chr2 (128-237)||(12741709-12741818)
chr2 (128-236)||(18355305-18355413)
chr2 (128-236)||(10328884-10328992)
chr2 (128-237)||(1615906-1616014)
[»] scaffold0596 (1 HSPs)
scaffold0596 (128-237)||(675-784)
[»] chr4 (3 HSPs)
chr4 (128-237)||(29863352-29863461)
chr4 (128-182)||(24260241-24260294)
chr4 (128-168)||(12506457-12506497)
[»] chr1 (1 HSPs)
chr1 (128-183)||(50990928-50990983)
[»] scaffold0475 (1 HSPs)
scaffold0475 (128-182)||(7520-7573)
[»] scaffold0157 (1 HSPs)
scaffold0157 (128-168)||(13980-14020)


Alignment Details
Target: scaffold0035 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 35084 - 35193
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  35084 tgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctcatcatttggctaagcatgcatc 35183  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  35184 tcatcctttg 35193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 33045531 - 33045422
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||    
T  33045531 tgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttggttaagcatgcatc 33045432  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  33045431 tcatcctttg 33045422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 10092533 - 10092641
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  10092533 tgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 10092632  T
Q  228 tcatccttt 236  Q
    |||| ||||    
T  10092633 tcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 8976425 - 8976534
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||| | |||| ||||||| |||| | ||| ||||||||    
T  8976425 tgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaacatgcatc 8976524  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  8976525 tcatcctttg 8976534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 3065719 - 3065809
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaag 219  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||| ||||    
T  3065719 tgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctcatcatttggctaag 3065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 30908469 - 30908414
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 183  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30908469 tgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 16246727 - 16246778
Alignment:
Q  132 aacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 183  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  16246727 aacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 4660275 - 4660222
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 182  Q
    |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||    
T  4660275 tgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 22009628 - 22009519
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  22009628 tgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 22009529  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  22009528 tcatcctttg 22009519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 9043823 - 9043932
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  9043823 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 9043922  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  9043923 tcatcctttg 9043932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 30442647 - 30442538
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  30442647 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 30442548  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  30442547 tcatcctttg 30442538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 7473589 - 7473480
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||||||    
T  7473589 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttagctaagcatgcatc 7473490  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  7473489 tcatcctttg 7473480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 26841064 - 26841000
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26841064 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggag 26841000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 19085477 - 19085422
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 183  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19085477 tgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 22004556 - 22004448
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| || || |||||  | | |||| |||||||||||||| | ||||| |||     
T  22004556 tgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgcc-aatcaaggtggtccgttggatctcatcatttggctcagcattcata 22004458  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  22004457 tcatcctttg 22004448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 31685100 - 31685207
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  31685100 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctcatcatttggctaagcatgcatctc 31685199  T
Q  230 atcctttg 237  Q
    ||||||||    
T  31685200 atcctttg 31685207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 17681788 - 17681896
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||    
T  17681788 tgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctcatcatttggttaagcatgcatc 17681886  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  17681887 tcatcctttg 17681896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 37982370 - 37982478
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  37982370 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagcatgcatc 37982469  T
Q  228 tcatccttt 236  Q
    |||||||||    
T  37982470 tcatccttt 37982478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 19882211 - 19882102
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  19882211 tgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagcatgcatc 19882112  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  19882111 tcatcctttg 19882102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 53973386 - 53973277
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||| ||||||    
T  53973386 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcatcatttggctaagcctgcatc 53973287  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  53973286 tcatcctttg 53973277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 2549960 - 2550066
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||    
T  2549960 ttaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-atcatttggctaagcatgcatctc 2550058  T
Q  230 atcctttg 237  Q
    ||||||||    
T  2550059 atcctttg 2550066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 12538735 - 12538627
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  12538735 tgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctcatcatttggctaagcatgcatc 12538637  T
Q  228 tcatcctttg 237  Q
     |||||||||    
T  12538636 acatcctttg 12538627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 24761996 - 24761889
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  | | |||| |||||||||||||| | ||||||||||||    
T  24761996 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcatcatttggctcagcatgcatctc 24761897  T
Q  230 atcctttg 237  Q
    ||||||||    
T  24761896 atcctttg 24761889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 24815938 - 24816045
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |  ||| |||| |||||||||||||| | ||||||||||||    
T  24815938 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctcatcatttggctcagcatgcatctc 24816037  T
Q  230 atcctttg 237  Q
    ||||||||    
T  24816038 atcctttg 24816045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 53352859 - 53352752
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | |  | | |||| |||||||||||||| | ||  ||||||||    
T  53352859 ttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctcatcatttggctcagtgtgcatctc 53352760  T
Q  230 atcctttg 237  Q
    ||||||||    
T  53352759 atcctttg 53352752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 53027850 - 53027743
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatctc 229  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||||| ||||||||  | |  | | |||| |||||||||||||| | ||||||||||||    
T  53027850 ttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctcatcatttggctcagcatgcatctc 53027751  T
Q  230 atcctttg 237  Q
    ||||||||    
T  53027750 atcctttg 53027743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 27431 - 27539
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  27431 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctcatcatttggctaagcatgcatc 27529  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  27530 tcatcctttg 27539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 11734 - 11625
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  11734 tgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcatcatttggttaagcatgcatc 11635  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  11634 tcatcctttg 11625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 5657792 - 5657901
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  5657792 tgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcatcatttggttaagcatgcatc 5657891  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  5657892 tcatcctttg 5657901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 14678121 - 14678012
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  14678121 tgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 14678022  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  14678021 tcatcctttg 14678012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 31100972 - 31100863
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||    
T  31100972 tgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcatcatttggttaagcatgtatc 31100873  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  31100872 tcatcctttg 31100863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 27541658 - 27541550
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| || |||| |||||||||||||| ||||||||||||    
T  27541658 tgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctcc-aaacaagggacgccgttggatctcatcatttggctaagcatgcatc 27541560  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  27541559 tcatcctttg 27541550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 24788131 - 24788079
Alignment:
Q  130 ttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 182  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||| ||||    
T  24788131 ttaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 23738678 - 23738731
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 182  Q
    |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||    
T  23738678 tgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 1262109 - 1262218
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||    
T  1262109 tgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctcatcatttggctaagcatgcatc 1262208  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  1262209 tcatcctttg 1262218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 43071482 - 43071373
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  43071482 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 43071383  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  43071382 tcatcctttg 43071373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 48849907 - 48849798
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||| ||||||||||||    
T  48849907 tgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctcatcatttggctaagcatgcatc 48849808  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  48849807 tcatcctttg 48849798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 26910081 - 26909972
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |  ||| |||| ||||||||| ||||||||||||    
T  26910081 tgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttatcatttggctaagcatgcatc 26909982  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  26909981 tcatcctttg 26909972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 22007361 - 22007416
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 183  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  22007361 tgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 23349080 - 23348971
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  23349080 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 23348981  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  23348980 tcatcctttg 23348971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 12741709 - 12741818
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  12741709 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaagcatgcatc 12741808  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  12741809 tcatcctttg 12741818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 18355413 - 18355305
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  18355413 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctcatcatttggctaagcatgcatc 18355314  T
Q  228 tcatccttt 236  Q
    |||||||||    
T  18355313 tcatccttt 18355305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 10328992 - 10328884
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||| ||||||||||||    
T  10328992 tgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctcatcatttggctaagcatgcatc 10328893  T
Q  228 tcatccttt 236  Q
    |||||||||    
T  10328892 tcatccttt 10328884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 1616014 - 1615906
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||| |||||| |||| || |  |||| |||||||||||| |||||||| ||||||||   |||| ||| |||||||||| ||||||||||||    
T  1616014 tgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcgcatcatttggctaagcatgcatc 1615916  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  1615915 tcatcctttg 1615906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 675 - 784
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||||||| ||||||||||||    
T  675 tgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctcatcatttggctaagcatgcatc 774  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  775 tcatcctttg 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 29863461 - 29863352
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggctgttgaatctcatcatttggttaagcatgcatc 227  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||    
T  29863461 tgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctgagcatgcatc 29863362  T
Q  228 tcatcctttg 237  Q
    ||||||||||    
T  29863361 tcatcctttg 29863352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 24260241 - 24260294
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 182  Q
    |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||    
T  24260241 tgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 24260294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 12506457 - 12506497
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaat 168  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  12506457 tgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 50990928 - 50990983
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 183  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  50990928 tgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 7573 - 7520
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaa 182  Q
    |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||    
T  7573 tgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 14020 - 13980
Alignment:
Q  128 tgttaacattgctaatgattttgcaaaccctaaacctaaat 168  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  14020 tgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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