View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_low_16 (Length: 227)
Name: NF3983_low_16
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2623374 - 2623595
Alignment:
| Q |
1 |
caacaagtgatattgaggtttaaaaggagttgaatagactttactaaaactcgggagatcggtttaatttttattgaaaacttgatcttcattgaacttg |
100 |
Q |
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| T |
2623374 |
caacaagtgatattgaggtttaaaaggagttgaatagactttactaaaactcgggagatcggtttaatttttattgaaaacttgatcttcattgaacttt |
2623473 |
T |
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| Q |
101 |
cctaattgttttctttttgatggatttaggagataatttctactggtttattcattctgcaaaataaagcagtggtaagattttgtttctactcttcagg |
200 |
Q |
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| T |
2623474 |
cctaattgttttctttttgatggatttaggagataatttctactggtttattcattctgcaaaataaagcagtggtaagattttgtttctactcttcagg |
2623573 |
T |
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| Q |
201 |
nnnnnnnccccttgaaaaagtt |
222 |
Q |
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||||||||||||||| |
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| T |
2623574 |
tttttttccccttgaaaaagtt |
2623595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2639261 - 2639458
Alignment:
| Q |
1 |
caacaagtgatattgaggtttaaaaggagttgaatagactttactaaaactcgggagatcggtttaatttttattgaaaacttgatcttcattgaacttg |
100 |
Q |
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||||||| |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2639261 |
caacaagcgatattgaggttgaaaaggagttgaatcgactttgctaaaactcgggagatcggtttaatttt-attgaaaacttgatcttcattgaacttg |
2639359 |
T |
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| Q |
101 |
cctaattgttttctttttgatggatttaggagataatttctactggtttattcattctgcaaaataaagcagtggtaagattttgtttctactcttcag |
199 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2639360 |
cctaattgttttctttttgaatgatttaggaaataatttctacttgtttattcattctgcaaaataaagaagtggtaagattttgtttctactcttcag |
2639458 |
T |
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