View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_low_2 (Length: 514)
Name: NF3983_low_2
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 163 - 512
Target Start/End: Original strand, 14929818 - 14930153
Alignment:
| Q |
163 |
aagatatgactgaattgtccgctatattggtcactaacaatggcaactaatatcgacannnnnnnatatcaatctctgaatcgatcacaaactcgtttta |
262 |
Q |
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| T |
14929818 |
aagatatgattgaattgtccgctatattggtcgctaacaatagcaactaatatcgacatttttt-atatcaatctctgaatcgatcacaaactcgtttta |
14929916 |
T |
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| Q |
263 |
acttctgatttgaaaatcagtagcaaaatcggttgctagagggaccaatatattttgtcgctaaataacaagttttagtagttttcaaaattataaagca |
362 |
Q |
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| T |
14929917 |
acttctgatttgaaaatcagtagcaaaatcggttgctagagggaccaatatattttgtcactaaattacaagttttagtagttttcaa------aaagca |
14930010 |
T |
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| Q |
363 |
caaaacattatggtccgtttactttgtgaaaacattttcattaagtaaatacatagcttcttggtttttcccgtctctaatttccgttgttaattcaaca |
462 |
Q |
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| T |
14930011 |
tacaacattatgttccgtttactttgtgaaaacattttcactaagcaaata-------gcttagttttttctgtctctaatttccgttgttaattcaaca |
14930103 |
T |
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| Q |
463 |
ggttagcatcgaagtgtttaggaagaagcatgtgttggtattcatatcag |
512 |
Q |
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| T |
14930104 |
ggttagcatcgaagtgtttaggaagaagcatgtattggtattcatttcag |
14930153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 14929631 - 14929795
Alignment:
| Q |
5 |
gaagattactggaggcgtaagagggttcttcaaactccaacagaaattgttgaggttttgaaggttctagttttccacaatgaaattcaggacccccttg |
104 |
Q |
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| T |
14929631 |
gaagattactggagacgtaagagggttcttcaaactccaacagaaattgttgaggttttgaaggttctagtcttccacaatgaaattcaggacccccttg |
14929730 |
T |
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| Q |
105 |
tgtttgatggcttgaacagacaaatggttagttaatattcaaatgtggctcatgtttaaagatat |
169 |
Q |
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| T |
14929731 |
tgtttgatggcttgaacagacaaatggttagttaatatttaaatgtggttcatgtttaaagatat |
14929795 |
T |
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