View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3983_low_3 (Length: 469)
Name: NF3983_low_3
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 2 - 450
Target Start/End: Complemental strand, 53561998 - 53561548
Alignment:
| Q |
2 |
gtaggaattctatcatagaggagtttccacgagaagacaacgaccttggtcg-cgccggactcttccaaatatgcttaaacaccctcctctctagttcat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561998 |
gtaggaattctatcatggaggagtttccacgagaagacaacgaccttggacggcgccggactcttccaaatatgcttaaacaccctcctctctagttcat |
53561899 |
T |
|
| Q |
101 |
gaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaacgccaatcgtcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561898 |
caaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaacgccaatcgtcttc |
53561799 |
T |
|
| Q |
201 |
aacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcctcctcccacac-aaaagatcccttctccaactaaaatcccaatta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53561798 |
aacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcctcctcccacacaaaaagatcccttctccaactaaaatcccaatta |
53561699 |
T |
|
| Q |
300 |
cctcccaccctgccactcacccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattac |
399 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561698 |
cctcccaccccgccactcacccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattac |
53561599 |
T |
|
| Q |
400 |
ccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattcc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561598 |
ccctccacacgtcattccaaaacctcgtaaccctcccgttgccaacattcc |
53561548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 34821779 - 34821823
Alignment:
| Q |
117 |
caccatcaatgtttccaatttggaatacatagatttaaccgaaaa |
161 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||| |||||||| |
|
|
| T |
34821779 |
caccatcaatgtttccaatctagaatacattgattttaccgaaaa |
34821823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 22154312 - 22154410
Alignment:
| Q |
330 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
428 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
|
|
| T |
22154312 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22154410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 22210227 - 22210325
Alignment:
| Q |
330 |
ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta |
428 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| |||||||||| | |||| || ||||| ||||| |||||| |
|
|
| T |
22210227 |
ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta |
22210325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 379
Target Start/End: Complemental strand, 4903435 - 4903175
Alignment:
| Q |
120 |
catcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaacgccaatcgtcttcaacatccgaaaacacaaaa |
219 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||| ||||| |||||| |||||| || | | || || ||||| |
|
|
| T |
4903435 |
catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaac |
4903336 |
T |
|
| Q |
220 |
ccattcaaatcctccaacattgcatcaacaagatcctcctcccacac-aaaagatcccttctccaactaaaatcccaattacctcccaccctgccactca |
318 |
Q |
| |
|
|||||||||||||| | || ||| || ||| ||||||||||| ||||| |||||||||||||||||| |||| |||||| | | | | ||| |
|
|
| T |
4903335 |
ccattcaaatcctcgagcaaatcatgaagaagtaaatcctcccacacaaaaaggtcccttctccaactaaaagcccaccaacctccaagaccgtctctct |
4903236 |
T |
|
| Q |
319 |
cccgacagtccccaataaaaccctctttttggttagacaaggagaacaatcttggatattt |
379 |
Q |
| |
|
||| | || |||||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4903235 |
cccataaatcttcaataaaagcctctttctgattagacaaggagaacaatcttggatattt |
4903175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 1556915 - 1556846
Alignment:
| Q |
116 |
tcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactcca |
185 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||| ||||| |||| |||||||| ||||| ||||| |
|
|
| T |
1556915 |
tcaccatccttgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctcca |
1556846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University