View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_low_5 (Length: 443)
Name: NF3983_low_5
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 67 - 427
Target Start/End: Complemental strand, 39732809 - 39732449
Alignment:
| Q |
67 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc |
166 |
Q |
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| T |
39732809 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc |
39732710 |
T |
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| Q |
167 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
266 |
Q |
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| T |
39732709 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
39732610 |
T |
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| Q |
267 |
taatgttgataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
366 |
Q |
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| T |
39732609 |
taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
39732510 |
T |
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| Q |
367 |
gatgcttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatg |
427 |
Q |
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| T |
39732509 |
gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatg |
39732449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39732910 - 39732840
Alignment:
| Q |
1 |
tacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
71 |
Q |
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| T |
39732910 |
tacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 111 - 302
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
| Q |
111 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa |
210 |
Q |
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| T |
37476844 |
ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa |
37476943 |
T |
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| Q |
211 |
ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaaaataaatgaaaagagcaattaag |
302 |
Q |
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| T |
37476944 |
ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag |
37477029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
4 |
acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
56 |
Q |
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| T |
39901566 |
acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
| Q |
111 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
198 |
Q |
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| T |
39868226 |
ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat |
39868313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
| Q |
111 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
198 |
Q |
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| T |
39901700 |
ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat |
39901787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39868067 - 39868122
Alignment:
| Q |
1 |
tacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
56 |
Q |
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| T |
39868067 |
tacacataggaactaatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
| Q |
111 |
ataccatttatagcccccaacatcaaatacatctgaacagag |
152 |
Q |
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| T |
39913661 |
ataccatttatagcccccagcttcaaatacatctgaatagag |
39913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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