View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3983_low_6 (Length: 419)
Name: NF3983_low_6
Description: NF3983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3983_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 91 - 409
Target Start/End: Original strand, 15596066 - 15596387
Alignment:
| Q |
91 |
gaaaatttgaatgtctgttaaaatcaaaggatggacttgccgcaggtctttaccctttaaccaatctatttgacttgtatcgtaatccacatgcattgca |
190 |
Q |
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| T |
15596066 |
gaaaatttgaatgtgtgttaaaatcaaaggatggacttgccgcaggtctatacccttgaaccaatctatttgacttgtatcgtaatccacatgcattgca |
15596165 |
T |
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| Q |
191 |
taaagtatttttccccaaaggacctgacctccattgagta---ctctctttggtctcacaatgactgtaccttctctctctatacatatctattttccta |
287 |
Q |
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| T |
15596166 |
taaagtattttcccccaaaggacctgacctccattgagtagtactctctttggtctcacaatgactgtaacttctctctatatacatatctattttccta |
15596265 |
T |
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| Q |
288 |
gctctacttttcttaatacaacttgacttcactttagtccttcgcagagggttgagtttttcccttaccatattgctcctctttgatattctctttatat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15596266 |
gctctacttttcttaatacaacttgacttcactttagtccttcgcaaaggattgagtttttcccttaccatattgctcctctttgatattctctttatat |
15596365 |
T |
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| Q |
388 |
atagtatccaatttctcctttg |
409 |
Q |
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|||||||||||||||||||||| |
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| T |
15596366 |
atagtatccaatttctcctttg |
15596387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 91 - 409
Target Start/End: Original strand, 15645689 - 15646012
Alignment:
| Q |
91 |
gaaaatttgaatgtctgttaaaatcaaaggatggacttgccgcaggtctttaccctttaaccaatctatttgacttgtatcgtaatccacatgcattgca |
190 |
Q |
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| T |
15645689 |
gaaaatttgaatgcttgttaaaatcaaaggatggacttgccacaggtctataccctttaaccaatcgatttgacttgtatcttaatccacatgcattgca |
15645788 |
T |
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| Q |
191 |
taaagtatttttccccaaaggacctgacctccattgagtactctctttggtctcacaatgactgtaccttctctctctatacatatctattttcctagct |
290 |
Q |
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| T |
15645789 |
taaagtatttttccccaaaggacccaatctccattgagttgtgtatttggtctcacaatgactgcaacttctctctttatatatatctatgatcttatct |
15645888 |
T |
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| Q |
291 |
ctacttttcttaatacaacttgacttcactttagtccttcgcagagg--gttgagtttttcccttaccatattgctcctctttgatattctctttat--- |
385 |
Q |
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||| | ||||||||| || |||||||||||||||||||| | ||||| |||||| ||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
15645889 |
ctattcttcttaatagaatttgacttcactttagtcctttgtagaggcttttgagtatttcctttaccatattgctcttctttcatattctctttatgta |
15645988 |
T |
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| Q |
386 |
atatagtatccaatttctcctttg |
409 |
Q |
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||| ||||||||||||||||||| |
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| T |
15645989 |
ttattgtatccaatttctcctttg |
15646012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 113 - 337
Target Start/End: Original strand, 15587139 - 15587357
Alignment:
| Q |
113 |
atcaaaggatggacttgccgcaggtctttaccctttaaccaatctatttgacttgtatcgtaatccacatgcattgcataaagtatttttccccaaagga |
212 |
Q |
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|||||| | |||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
15587139 |
atcaaaagctggacttgccttaggtctataccctttaaccaatccatttaacttgtatcgtaatccacatgcattgcacaaactatttttccccaaagga |
15587238 |
T |
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| Q |
213 |
cctgacctccattgagtactctctttggtctcacaatgactgtaccttctctctctatacatatctattttcctagctctacttttcttaatacaacttg |
312 |
Q |
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||| ||||||||||||| ||||||| ||||||||||| ||| | ||||||||| | ||| | |||| | |||||||| ||||||||| ||| || |
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| T |
15587239 |
ccttccctccattgagtagtctctttcgtctcacaatggctgcaacttctctct-----cctat-gaatttcttggctctactcttcttaatagaacatg |
15587332 |
T |
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| Q |
313 |
acttcactttagtccttcgcagagg |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
15587333 |
acttcactttagtccttcgcagagg |
15587357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 122 - 337
Target Start/End: Original strand, 15637054 - 15637263
Alignment:
| Q |
122 |
tggacttgccgcaggtctttaccctttaaccaatctatttgacttgtatcgtaatccacatgcattgcataaagtatttttccccaaaggacctgacctc |
221 |
Q |
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|||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||| |
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| T |
15637054 |
tggacttgccttaggtctataccctttaaccaatccatttaacttgtatcgtaatccacatgcattgcacaaactattcttccccaaaggaccttccctc |
15637153 |
T |
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| Q |
222 |
cattgagtactctctttggtctcacaatgactgtaccttctctctctatacatatctattttcctagctctacttttcttaatacaacttgacttcactt |
321 |
Q |
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| T |
15637154 |
cattgagtagtctctttggtctcacaatggctgcaacttctatct-----cctat-gaatttcttggctctactcttcttaatagaacatgacttcactt |
15637247 |
T |
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| Q |
322 |
tagtccttcgcagagg |
337 |
Q |
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|||||||||||||||| |
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| T |
15637248 |
tagtccttcgcagagg |
15637263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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