View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_high_3 (Length: 466)
Name: NF3984_high_3
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 30565189 - 30564757
Alignment:
| Q |
15 |
actggaaaagtagcgaaggcaaagccggttcgttcaagcacacggctgggaaatgggctggagatccagatgataaaggtacttgttgacttagtatata |
114 |
Q |
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| T |
30565189 |
actggaaaagtagcgaaggcaaagccggttcgttcaagcacacggctgggaaatgggctggagatccagatgataaaggtacttgttgacttagtatata |
30565090 |
T |
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| Q |
115 |
ttgtataccgtctatttaactacaatgtgctcttgctatgaacgaaatgtaaaatggatttttatgtgttactattagacgcttgaacaacacaaagtta |
214 |
Q |
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| T |
30565089 |
ttgtataccgtctatttaactacaatgtgctcttgctatgaacgaaatgtaaaatggatttttatgtgttactattagacgcttgaacaacacaaagtta |
30564990 |
T |
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| Q |
215 |
aggatagacatttatgtgaatgcaaaattttaaattgcggggtctgcaactgcaattgtagctcgcaagtcaaggttttttgaatctctgcaaccgcggc |
314 |
Q |
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| T |
30564989 |
aggatagacatttatgtgaatgcaaaattttaaattgcggggtctgcaactgcagttgtagctcgcaagtcaaggttttttgaatctctgcaaccgcggc |
30564890 |
T |
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| Q |
315 |
cacgatcacaatttaataccttaagtgaatgcatgtttcttttcctttcccaacatataaaactgaatgaggataggaaagacatttgacctcaaagtgc |
414 |
Q |
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| T |
30564889 |
cacgatcacaatttaataccttaagtgaatgcatg-ttcttttcctttcccaacatataaaactgaatgaggataggaaagacatttgacctcaaagtgc |
30564791 |
T |
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| Q |
415 |
cctcgagctacagtttgcaaatttatgaggtgat |
448 |
Q |
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| T |
30564790 |
cctcgagctacagtttgcaaatttattaggtgat |
30564757 |
T |
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