View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_high_4 (Length: 373)
Name: NF3984_high_4
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 37092427 - 37092803
Alignment:
| Q |
1 |
tatatatattcactatatatttcacatttttacaaaataagaatcacaaagaaaaataatttagagcacaaatataacctgttgtttaactccaagagta |
100 |
Q |
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| T |
37092427 |
tatatatattcactatatatttcacatttttaaaaaataagaatcacaaagaaaaataatttagaacacaaatataacctgttgtttaactccaagagga |
37092526 |
T |
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| Q |
101 |
taaatatctccataggtaacattccaagtatagaacctataagggtcttctccatttgaacttgtcacaacaagcaacactactaacaaaaatgagagaa |
200 |
Q |
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| T |
37092527 |
taaatatctccataggtaacattccaagtatagaacctataagggtcttctccatttgaacttgtcacaacaagcaacactactaacaaaaatgagagaa |
37092626 |
T |
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| Q |
201 |
accctagtctcattgagtacttcatttc--------------------ttcctttggctctagaggtttatcaagctatgagatataaggtaatgttttg |
280 |
Q |
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| T |
37092627 |
accctagtctcattgagtacttcatttcttcaaactccacttttttttttcctttggctctagaggtttatcaagctatgagatataaggtaatgttttg |
37092726 |
T |
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| Q |
281 |
ttatgctctgtcggtgtaataatgagagagaaaaggagaggatgcttcattcaacatgagtaatggaccagtcttct |
357 |
Q |
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| T |
37092727 |
ttatgctctgtcggtgtaataatgagagagaaaaggagaggatgcttcattcaacatgagtaatggaccagtcttct |
37092803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 17139161 - 17139270
Alignment:
| Q |
77 |
acctgttgtttaactccaagagtataaatatctccataggtaacattccaagtatagaacctataagggtcttctccatttgaacttgtcacaacaagca |
176 |
Q |
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| T |
17139161 |
acctgttgtttaactccaagtggataaatatcaccatatgtaacattccaattataaaacctataaggatcttctccatttgcacatg---caacaagta |
17139257 |
T |
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| Q |
177 |
acactactaacaa |
189 |
Q |
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| T |
17139258 |
acactaccaacaa |
17139270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 17345338 - 17345229
Alignment:
| Q |
77 |
acctgttgtttaactccaagagtataaatatctccataggtaacattccaagtatagaacctataagggtcttctccatttgaacttgtcacaacaagca |
176 |
Q |
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|||||||||||||||||||| | ||||||||||||||| |||||||||||| | || ||||||||||| ||||||||||||| || || ||||||| | |
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| T |
17345338 |
acctgttgtttaactccaagtggataaatatctccatatgtaacattccaattgtaaaacctataaggatcttctccatttgcacatg---caacaagta |
17345242 |
T |
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| Q |
177 |
acactactaacaa |
189 |
Q |
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||||||| ||||| |
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| T |
17345241 |
acactaccaacaa |
17345229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 55294155 - 55294082
Alignment:
| Q |
77 |
acctgttgtttaactccaagagtataaatatctccataggtaacattccaagtatagaacctataagggtcttc |
150 |
Q |
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|||||||||||||| ||||||| ||| ||||| ||||| || | |||||||| |||| |||||||||||||| |
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| T |
55294155 |
acctgttgtttaacaccaagaggatagatatcaccatatgtgattttccaagtgaagaatctataagggtcttc |
55294082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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