View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_high_5 (Length: 355)
Name: NF3984_high_5
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_high_5 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 35882670 - 35882986
Alignment:
| Q |
20 |
agcagaaggaaggtgtggaccagtgtattgggccgtgttacccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgat |
119 |
Q |
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| T |
35882670 |
agcagaaggaaggtgtggaccagtgtattgggccgtgttgcccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgat |
35882769 |
T |
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| Q |
120 |
gactctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtac |
215 |
Q |
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| T |
35882770 |
gactctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtac |
35882869 |
T |
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| Q |
216 |
agnnnnnnnntgattcaatgttttgaattttgatttctttcgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggttt |
315 |
Q |
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| T |
35882870 |
agaaaaaaaatgattcaatgttttgaattttgatttctttcgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggttt |
35882960 |
T |
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| Q |
316 |
ttaattttctaatgtcctattctctg |
341 |
Q |
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| T |
35882961 |
ttaattttctaatgtcctattctctg |
35882986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 24456871 - 24457187
Alignment:
| Q |
20 |
agcagaaggaaggtgtggaccagtgtattgggccgtgttacccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgat |
119 |
Q |
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| T |
24456871 |
agcagaaggaaggtgtggaccagtgtattgggccgtgttgcccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgat |
24456970 |
T |
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| Q |
120 |
gactctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24456971 |
gactctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtac |
24457070 |
T |
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| Q |
216 |
agnnnnnnnntgattcaatgttttgaattttgatttctttcgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggttt |
315 |
Q |
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| T |
24457071 |
agaaaaaaaatgattcaatgttttgaattttgatttctttcgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggttt |
24457161 |
T |
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| Q |
316 |
ttaattttctaatgtcctattctctg |
341 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24457162 |
ttaattttctaatgtcctattctctg |
24457187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 2264 - 2132
Alignment:
| Q |
70 |
tacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttg-ttgacttatcgaaactgaaacatccaaact |
168 |
Q |
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||||||||||||| |||||||||||| ||| ||||| |||||| ||||||| |||| | || |||| ||||||| || || || |||||||| || |
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| T |
2264 |
tacacgtggcaattaaggttcttgaaaatgctagagaggttgatcatgatgatgctgttgatacttttgtttgacttgtctaagcttaaacatcccaatc |
2165 |
T |
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| Q |
169 |
tgttgcctctttctggttactgtattgcaggta |
201 |
Q |
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| T |
2164 |
ttttgccactttctggttactgcatcgcaggta |
2132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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