View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_high_6 (Length: 342)
Name: NF3984_high_6
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 3621723 - 3621400
Alignment:
| Q |
4 |
cagagaattatcttcttttgctt---gttcatcttgactagaaattcgggttgtatataaaatggttcaataat-gggaacatgttgaaacttatgtgaa |
99 |
Q |
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|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
3621723 |
cagagaattagcttcttttgctttttgttcatcttgattagaaattcgggttgtatataaaatggttcaataattgggaacacgttgaaacttatgtgaa |
3621624 |
T |
|
| Q |
100 |
tgtgaaagtactggtatgaagcaaattccatttatactactgtgttttcagcatttcatatagaaagacatcgacaacaaatagactttctacatttttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3621623 |
tgtgaaagtactggtatgaagcaaattccatttatactactgtgttttcagcatttcatatagaaagacatcgacaacaaatagactttctacatttttc |
3621524 |
T |
|
| Q |
200 |
cgtaatatcgttgaataggtctaatgcaaactatccttctaagactatataattctacgtgttaacgatgaattatgctaacatttgttctcttcctaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3621523 |
tgtaatatcgttgaataggtctaatgcaaactatccttctaagactatataattctacgtgttaacgataaattatgctaacatttgttctcttcctaat |
3621424 |
T |
|
| Q |
300 |
tcagtaatttctgaactactacta |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
3621423 |
tcagtaatttctgaactactacta |
3621400 |
T |
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