View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_high_9 (Length: 300)
Name: NF3984_high_9
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 25308111 - 25307840
Alignment:
| Q |
11 |
cacagaattcaaggtatataaaaatatatcaaagttgtggaagtacattttctctaagcttttcatattatgcttcatatctattatattaatataatgt |
110 |
Q |
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| T |
25308111 |
cacagaattcaaggtatataaaaatatatcaaagttgtggaagtacattttctctaagctttt-atattatgcttcatctctattatactaatataatgt |
25308013 |
T |
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| Q |
111 |
tatagttttgtttaattgtataataatgcattttatttcagtgctactttctatctttcttcgcccttaag-nnnnnnnncttcttagtttagtttatca |
209 |
Q |
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| T |
25308012 |
tatagttttggttaattgtataacaatgcattttatttccttgctactttctatctttcttcgcccttaagtgttttttttttcttagtttagtttatca |
25307913 |
T |
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| Q |
210 |
tagttttaaaaatgatatattgtttcatgtaacatattaatttcaatgatgtaaagcgtgatgtattcctact |
282 |
Q |
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| T |
25307912 |
tagttttaaaaatgatatattgtttcatgtaacatattaatttcaatgatgtacagcgtgatgtattcctact |
25307840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 25281023 - 25280936
Alignment:
| Q |
46 |
tgtggaagtacattttctctaagcttttcatattatgcttcatatctattatattaatataatgttatagttttgtttaattgtataa |
133 |
Q |
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| T |
25281023 |
tgtggaagtacattttctctaagctttccatattatcctttatctctgttatactaatataatgttatagttttggttaattatataa |
25280936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 25280315 - 25280258
Alignment:
| Q |
225 |
tatattgtttcatgtaacatattaatttcaatgatgtaaagcgtgatgtattcctact |
282 |
Q |
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| T |
25280315 |
tatattgtttcatgtaacatattaatttcaattatgtacagcgtgatgcattcctact |
25280258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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