View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_low_1 (Length: 742)
Name: NF3984_low_1
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 10 - 727
Target Start/End: Complemental strand, 620200 - 619482
Alignment:
| Q |
10 |
ataatactcaaccaagtatgttgttgtaatcttgatacacccagagactatagtaacaccccttcacacattcaatgatctattatcacttacatccccg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
620200 |
ataatactcaaccaagtatgttgttgtaatcttgatacacccagagactatagtaacaccccctcacacattcaatgatctattatcacttacatccccg |
620101 |
T |
|
| Q |
110 |
acattattcactcagtttcaaattcaccccgatattacaaacttaacgtcattaaagtccctacaaataccaattgaaaaacaaaactaattattttaca |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
620100 |
acattattcactcagtttcaaattcaccccgatattacaaacttaacgtcattaaagtccctacaaataccaattgaaaaacaaatctaattattttaca |
620001 |
T |
|
| Q |
210 |
atttcatatatcattttaaaatattaataatgtagaacactacattgacactccactacaatttcaagcacctaaatgaattgaattttaaaaaagagtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
620000 |
atttcatatatcattttaaaatattaataatgtagaacactacattgacactccactacaatttcaagcacctaaatgaattgaattttaaaaaagagtt |
619901 |
T |
|
| Q |
310 |
taacttctatgcaccgacagtttaaagttttttcacacatccatccaatcaaatcacagcataatgctatttttattgataagtttctcaagtatccaca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
619900 |
taacttctatgcaccgacagtttaaagttttttcacacatccatccaatcaaatcacagcataatgctatttttattgataagtttctcaagtatccaca |
619801 |
T |
|
| Q |
410 |
catcatgatttgatgcatgtgt-nnnnnnnnttacactatccgtgtatacaacttaaatccttagctaaccagatctttgagaatgatacaagcaaaacc |
508 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
619800 |
catcatgatttgatgcatgtgtaaaaaaaaattacactatccgtgtatacaacttaaatccttagctaacctgatctttgagaatgatacaagcaaaacc |
619701 |
T |
|
| Q |
509 |
agcattaacataaatgaattgaattttaagaaaaagttgaatttcatagtatacactgacactgtaaaactttttcacacatgcattcaatcaaatcaca |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
619700 |
agcattaacataaatgaattgaattttaagaaaaagttgaatttcatagtatacactgacactgtaaaactttttcacacatgcattcaatcaaatcaca |
619601 |
T |
|
| Q |
609 |
tcataatgccacattaatatgtaagttcctaaaacaccacctctacaaatatccacacacaaagtgtgatatgatttgatgcatgtgcaaaaagttttac |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
619600 |
tcataatgccacattaatatgtaagttcctaaaacaccacctctacaaatatccacacacaaagtgtgatatgatttgatgcatgtgcaaaaagttttac |
619501 |
T |
|
| Q |
709 |
actgacgatgtatccaact |
727 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
619500 |
actgacgatgtatccaact |
619482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 329098 - 329334
Alignment:
| Q |
21 |
ccaagtatgttgttgtaatcttgatacacccagagactatagtaacaccccttcacacattcaatgatctattatcacttacatccccgacattattcac |
120 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
329098 |
ccaagtatgttgtaataatcttgatacatccatagactataataacaccacctcacacattcaatgatctattatcacttacatccctgatattattcac |
329197 |
T |
|
| Q |
121 |
tcagtttcaaattcaccccgatattacaaacttaacgtcattaaagtccctacaaataccaattgaaaaacaaaactaattattttacaatttcatatat |
220 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |
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|
| T |
329198 |
tcagtttcaaattcatcccgacattacaaacttaacgtcattaaagtccctacaaataccaaccgaaaaacaaacataattattttacaatttcacatat |
329297 |
T |
|
| Q |
221 |
cattttaaaatattaataatgtagaacactacattga |
257 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||| |
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|
| T |
329298 |
cattttaaaatactgataatgtagaacactagattga |
329334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 294 - 468
Target Start/End: Original strand, 329687 - 329862
Alignment:
| Q |
294 |
attttaaaaaagagtttaacttctatgcaccgacagtttaaagttttttcacacatccatccaatcaaatcacagcataatgctatttttattgataagt |
393 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
329687 |
attttgaaaaagagtttaacttgtatgcaccgacaatgtaaagtttttttgcatatccatccaatcaaatcacatcataatgctatttttattggtaagt |
329786 |
T |
|
| Q |
394 |
ttctcaagtatccacacatcatgatttgatgcatgtgt-nnnnnnnnttacactatccgtgtatacaacttaaatc |
468 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||| |
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|
| T |
329787 |
ttctcaagtatccatacatcatgatttgatgtatgtgtaaaagagttttacactatcggtgtatacaacttaaatc |
329862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 556 - 665
Target Start/End: Original strand, 329890 - 329999
Alignment:
| Q |
556 |
agtatacactgacactgtaaaactttttcacacatgcattcaatcaaatcacatcataatgccacattaatatgtaagttcctaaaacaccacctctaca |
655 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
329890 |
agtatacactgacactaaaaagcttttttacacatgcatccaatcaaatcacatcataatgccacattaatatgtaagttcctaaaataccacctctaca |
329989 |
T |
|
| Q |
656 |
aatatccaca |
665 |
Q |
| |
|
|||||||||| |
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|
| T |
329990 |
aatatccaca |
329999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 521
Target Start/End: Complemental strand, 619492 - 619423
Alignment:
| Q |
452 |
tgtatacaacttaaatccttagctaaccagatctttgagaatgatacaagcaaaaccagcattaacataa |
521 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||| | |||||||||| |||||||||||||||||||||| |
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|
| T |
619492 |
tgtatccaactaaaatccttaactaacctgatcctcaagaatgataccagcaaaaccagcattaacataa |
619423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 3660385 - 3660434
Alignment:
| Q |
558 |
tatacactgacactgtaaaactttttcacacatgcattcaatcaaatcac |
607 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
3660385 |
tatacactgacaatgtaaaacttctatacacatgcattcaatcaaatcac |
3660434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 21873576 - 21873656
Alignment:
| Q |
104 |
tccccgacattattcactcagtttcaaattcacccc-gatattacaaacttaacgtcattaaagtccctacaaataccaat |
183 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||| ||| |||||||| || |||| |||||| ||||||||||||||||||| |
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|
| T |
21873576 |
tccctgacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaat |
21873656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 35404037 - 35404100
Alignment:
| Q |
557 |
gtatacactgacactgtaaaactttttcacacatgcattcaatcaaatcacatcataatgccac |
620 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||| ||| |||||||| ||| ||||||| |
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|
| T |
35404037 |
gtatacactgacagtgtaaaacttttttacagatgcattgaataaaatcacaccatgatgccac |
35404100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 612
Target Start/End: Complemental strand, 12048371 - 12048330
Alignment:
| Q |
571 |
tgtaaaactttttcacacatgcattcaatcaaatcacatcat |
612 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12048371 |
tgtataacttttttacacatgcattcaatcaaatcacatcat |
12048330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 604
Target Start/End: Original strand, 45366758 - 45366805
Alignment:
| Q |
557 |
gtatacactgacactgtaaaactttttcacacatgcattcaatcaaat |
604 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
45366758 |
gtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat |
45366805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 21234914 - 21234963
Alignment:
| Q |
558 |
tatacactgacactgtaaaactttttcacacatgcattcaatcaaatcac |
607 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
21234914 |
tatacactgacagtgtaaaactcgttcacatatgcatccaatcaaatcac |
21234963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 606
Target Start/End: Complemental strand, 9685174 - 9685128
Alignment:
| Q |
560 |
tacactgacactgtaaaactttttcacacatgcattcaatcaaatca |
606 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
9685174 |
tacactgacgatgtaaaacttttctacacatgcattcaatcaaatca |
9685128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 613
Target Start/End: Original strand, 34299308 - 34299354
Alignment:
| Q |
567 |
acactgtaaaactttttcacacatgcattcaatcaaatcacatcata |
613 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
34299308 |
acactttaaaacttttttacacatgcattcattcaaatcatatcata |
34299354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 612
Target Start/End: Complemental strand, 14801319 - 14801274
Alignment:
| Q |
567 |
acactgtaaaactttttcacacatgcattcaatcaaatcacatcat |
612 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||| |||| |
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|
| T |
14801319 |
acactgtaaaacttttttacacatgtatccaatcaaatcacttcat |
14801274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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