View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_low_11 (Length: 239)
Name: NF3984_low_11
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 45757933 - 45757712
Alignment:
| Q |
18 |
caaccattattactttacttccctttctattctgccactaataatcaaacttcaactactatacattattggaattgaatcagagtttcatgatttacaa |
117 |
Q |
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| T |
45757933 |
caaccattattactttacttccctttctattctgccactaataatcaaacttcaactactatacattattggaattgaatcagagtttcatgatttacaa |
45757834 |
T |
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| Q |
118 |
gagtttgttgaatctgatcattatgttgatgtttggaaatgcttcatatcctgccaacagatataccatgatatttgcctcttgtatattcatcttggca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45757833 |
gagtttgttgaatctgatcattatgttgatgtttggaaatgcttcatatcctgccaacagatataccatgatatttgcctcttgtatattcatcttggca |
45757734 |
T |
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| Q |
218 |
gtatatatttggatttatcttc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
45757733 |
gtatatatttggatttatcttc |
45757712 |
T |
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