View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3984_low_2 (Length: 498)
Name: NF3984_low_2
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 36358250 - 36357792
Alignment:
| Q |
18 |
caaggtcatacaaatttttgtctttcatctctctctctatatatatatttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358250 |
caaggtcatacaaatttttgtctttcatctctatat--atatatatatttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaa |
36358153 |
T |
|
| Q |
118 |
caaacttttgacannnnnnnnnnnngatatggatcataagactaagttatggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaag |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358152 |
caaacttttgacattttttctttttgatatggatcataagactaagttatggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaag |
36358053 |
T |
|
| Q |
218 |
ccccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358052 |
ccccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatg |
36357953 |
T |
|
| Q |
318 |
ggattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagtaatattttctcatactttgaatatatttatgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36357952 |
ggattgattttccagctggtcctaccggaagatttaccaatggccgtacttcaattgacataatcagtaatattttctcacactttgaatatatttatgt |
36357853 |
T |
|
| Q |
418 |
tgacaagtttcatattggacgagatatagtttgaaaatatgtttataagttgcggacggtt |
478 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357852 |
tgacaagttttatattggacgagatatagtttgaaaatatgtttataagttgcggacggtt |
36357792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 242 - 387
Target Start/End: Complemental strand, 5573573 - 5573428
Alignment:
| Q |
242 |
tttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtccta |
341 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||| |||||||| |||||||| ||||| ||||| ||||| | |
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| T |
5573573 |
tttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaa |
5573474 |
T |
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| Q |
342 |
ccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
387 |
Q |
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|||||||||||||||| || | ||| || |||||||||| ||||| |
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| T |
5573473 |
ccggaagatttaccaacggtagaactgcaattgacataataagtaa |
5573428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 386
Target Start/End: Complemental strand, 5576758 - 5576591
Alignment:
| Q |
219 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
318 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| || ||||| | ||| ||| ||| |||||||| |||||||| |
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| T |
5576758 |
cccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatgg |
5576659 |
T |
|
| Q |
319 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagta |
386 |
Q |
| |
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||||| || || || || ||||||||||||||||| || || |||||| |||||||||| |||| |
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| T |
5576658 |
aattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta |
5576591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 5587127 - 5586959
Alignment:
| Q |
219 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
318 |
Q |
| |
|
||||||| || ||||| || || |||||||| |||||||| || |||||||||||||||||||| ||||| ||| ||| |||||||| || ||||| |
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| T |
5587127 |
cccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatgg |
5587028 |
T |
|
| Q |
319 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
387 |
Q |
| |
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|| || ||||| || || || |||||||||||||| || || |||||| |||||||||||||||| |
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| T |
5587027 |
aatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaa |
5586959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 5593363 - 5593300
Alignment:
| Q |
219 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
282 |
Q |
| |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
5593363 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
5593300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 7017710 - 7017571
Alignment:
| Q |
221 |
caagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatggga |
320 |
Q |
| |
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||||| || |||||||| ||||||| || |||||||| |||||||||||||||||| | || | ||| ||| ||||||||||||| || ||||| | |
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| T |
7017710 |
caagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggca |
7017611 |
T |
|
| Q |
321 |
ttgattttccagctggtcctaccggaagatttaccaatgg |
360 |
Q |
| |
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| |||||||| | ||||| || ||||| ||||| ||||| |
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| T |
7017610 |
tcgattttccgacaggtccaacaggaaggtttactaatgg |
7017571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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