View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3984_low_7 (Length: 315)

Name: NF3984_low_7
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3984_low_7
NF3984_low_7
[»] chr2 (12 HSPs)
chr2 (155-307)||(2474238-2474390)
chr2 (155-302)||(2469972-2470119)
chr2 (193-307)||(2458018-2458132)
chr2 (188-307)||(3063281-3063403)
chr2 (177-307)||(2462594-2462727)
chr2 (200-307)||(2466642-2466752)
chr2 (208-277)||(2471021-2471090)
chr2 (1-50)||(2474509-2474558)
chr2 (110-158)||(2474456-2474504)
chr2 (217-307)||(2486512-2486602)
chr2 (217-276)||(2478858-2478917)
chr2 (217-276)||(2483362-2483421)
[»] chr4 (1 HSPs)
chr4 (188-307)||(18015917-18016039)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 2474390 - 2474238
Alignment:
Q  155 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 254  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  2474390 aatacaaacaaatatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacattt 2474291  T
Q  255 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474290 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 2474238  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 2470119 - 2469972
Alignment:
Q  155 aatacaaacaaatatgaataaattagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacattt 254  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2470119 aatacaaataaatatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacattt 2470020  T
Q  255 cactttggcacatccaatacgttttgtgtttctccaaaccacctgagt 302  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  2470019 cactttggcacatccaatccgttgtgtgtttctccaaaccacctgagt 2469972  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 2458132 - 2458018
Alignment:
Q  193 ccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa 292  Q
    |||| ||||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  2458132 ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa 2458033  T
Q  293 ccacctgagtataat 307  Q
    | |||||||| ||||    
T  2458032 caacctgagtgtaat 2458018  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 3063281 - 3063403
Alignment:
Q  188 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 284  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  3063281 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 3063380  T
Q  285 tctccaaaccacctgagtataat 307  Q
    ||||||||| |||||||||||||    
T  3063381 tctccaaacaacctgagtataat 3063403  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 2462727 - 2462594
Alignment:
Q  177 ttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctc---cattatcacatttcactttggcacatccaata 273  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    |||||||||| |||||||||||||||||| |    
T  2462727 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 2462628  T
Q  274 cgttttgtgtttctccaaaccacctgagtataat 307  Q
    |||| || |||||||||||| ||||| |||||||    
T  2462627 cgttgtgagtttctccaaacaacctgggtataat 2462594  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 2466752 - 2466642
Alignment:
Q  200 agttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtttctccaaaccac 296  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||||||||||| ||    
T  2466752 agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaac 2466653  T
Q  297 ctgagtataat 307  Q
    ||| |||||||    
T  2466652 ctgggtataat 2466642  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 2471090 - 2471021
Alignment:
Q  208 ggtgggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgtt 277  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaacacgtt 2471021  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2474558 - 2474509
Alignment:
Q  1 catactattttgtccgaaaaaatatttgtggatggtgtgagttagttaaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474558 catactattttgtccgaaaaaatatttgtggatggtgtgagttagttaaa 2474509  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 2474504 - 2474456
Alignment:
Q  110 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474504 ttcactttaaattaaataccacaaattatatatgagtaggggaaaaata 2474456  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 2486602 - 2486512
Alignment:
Q  217 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataat 307  Q
    |||||||||||||  ||||  || ||||||||||||||||||||| ||||||||| ||||  ||  |||  |||||| |||||||||||||    
T  2486602 taattgcaagtaacaaatgagccaccattatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat 2486512  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 2478917 - 2478858
Alignment:
Q  217 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 276  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2478917 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2478858  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 2483421 - 2483362
Alignment:
Q  217 taattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgt 276  Q
    ||||| |||||||  |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  2483421 taattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgt 2483362  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 18016039 - 18015917
Alignment:
Q  188 tttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaatacgttttgtgtt 284  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| ||||| || |||    
T  18016039 tttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtt 18015940  T
Q  285 tctccaaaccacctgagtataat 307  Q
    ||||||||| |||||||||||||    
T  18015939 tctccaaacaacctgagtataat 18015917  T

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