View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3984_low_8 (Length: 303)
Name: NF3984_low_8
Description: NF3984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3984_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 46442064 - 46441770
Alignment:
| Q |
1 |
tcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgtttcccgataagaatgacttatcattattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
46442064 |
tcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgcttcccgataagaatgacttatcgttattt |
46441965 |
T |
|
| Q |
101 |
cccgctcacgctccattagttgccgaattttctgcactggtttccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46441964 |
cccgctcacgctccattagttgccgaattttctgcactggtctccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgctt |
46441865 |
T |
|
| Q |
201 |
gggaatcaatacacaactccagtctccaccgccttgaatcctcgatcaatcaccatctgaagcccaagcaaaactccccaaagctcgcctttgct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46441864 |
gggaatcaatacacaactccagtctccaccgccttgaatcctcgatcaatcaccatctgaagcccaagcaaaactccccaaagctcgcctatgct |
46441770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University