View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_high_11 (Length: 471)

Name: NF3985_high_11
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_high_11
NF3985_high_11
[»] chr1 (9 HSPs)
chr1 (142-251)||(16530810-16530919)
chr1 (286-440)||(16530587-16530741)
chr1 (286-455)||(39063229-39063400)
chr1 (286-373)||(17684657-17684744)
chr1 (286-375)||(37779884-37779973)
chr1 (196-251)||(14771513-14771568)
chr1 (286-375)||(24268713-24268801)
chr1 (286-355)||(35186766-35186835)
chr1 (286-355)||(35585288-35585357)
[»] chr4 (10 HSPs)
chr4 (163-251)||(17293189-17293277)
chr4 (281-398)||(10315778-10315895)
chr4 (286-376)||(45941289-45941379)
chr4 (286-375)||(49815872-49815961)
chr4 (196-251)||(4910189-4910244)
chr4 (287-377)||(21171198-21171287)
chr4 (286-355)||(14968590-14968661)
chr4 (163-222)||(21410426-21410485)
chr4 (286-356)||(17293345-17293414)
chr4 (407-440)||(43035865-43035898)
[»] chr7 (6 HSPs)
chr7 (164-248)||(3379649-3379733)
chr7 (289-375)||(15899711-15899797)
chr7 (286-375)||(2204178-2204267)
chr7 (174-222)||(4230988-4231036)
chr7 (164-222)||(1641169-1641227)
chr7 (286-371)||(3379488-3379573)
[»] chr5 (3 HSPs)
chr5 (178-251)||(13129995-13130068)
chr5 (163-223)||(23190564-23190624)
chr5 (292-374)||(13129837-13129919)
[»] chr3 (7 HSPs)
chr3 (292-398)||(27188880-27188986)
chr3 (286-375)||(30194315-30194404)
chr3 (288-375)||(47759309-47759396)
chr3 (286-375)||(14633245-14633334)
chr3 (286-355)||(46412655-46412724)
chr3 (142-182)||(18441834-18441874)
chr3 (142-182)||(19486908-19486948)
[»] chr8 (4 HSPs)
chr8 (166-219)||(3588981-3589034)
chr8 (286-355)||(42167330-42167399)
chr8 (286-355)||(3588854-3588923)
chr8 (142-182)||(14120274-14120314)
[»] chr2 (3 HSPs)
chr2 (286-375)||(33405598-33405687)
chr2 (286-376)||(6978604-6978694)
chr2 (403-440)||(19507896-19507933)
[»] chr6 (3 HSPs)
chr6 (286-376)||(32132967-32133057)
chr6 (216-248)||(5972263-5972295)
chr6 (216-248)||(8711839-8711871)
[»] scaffold0859 (1 HSPs)
scaffold0859 (142-181)||(1878-1917)
[»] scaffold0146 (1 HSPs)
scaffold0146 (401-448)||(24522-24569)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 16530919 - 16530810
Alignment:
Q  142 atcataaaatcaatacctaaacctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatcaacaaaaccaaattatgtga 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16530919 atcataaaatcaatatctaaacctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatcaacaaaaccaaattatgtga 16530820  T
Q  242 caatttaacc 251  Q
     |||||||||    
T  16530819 gaatttaacc 16530810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 286 - 440
Target Start/End: Complemental strand, 16530741 - 16530587
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctatatatgtttcg 385  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||  | ||||| |||||||||| | |||| ||    
T  16530741 gagcgtaattgacgttgaatccgcaacaattgggaaatttggcacctcttgaacttcaatccgcaacaatggagttttggaaactcctatgtctgttccg 16530642  T
Q  386 tttttataacagatgagcggtagttaactatcgctagcaccagcggcagttaact 440  Q
    |||||||||||||||||||| ||||||||| || |  ||||||| ||||||||||    
T  16530641 tttttataacagatgagcggcagttaactaccgttgacaccagcagcagttaact 16530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 455
Target Start/End: Complemental strand, 39063400 - 39063229
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctatatatgtttcg 385  Q
    |||||||||||||||||||  |   |||||||| ||||||| |||||||||||||||||||||||||||| || ||||| |||||| ||| | ||||  |    
T  39063400 gagcgtaattgacgttgaacccacgacaattggcaaatttggcacctcttgaacttcaatccgcaacaatgaagttttggaaactcttatgtctgttctg 39063301  T
Q  386 tttttataacaga--tgagcggtagttaactatcgctagcaccagcggcagttaactattgccggaatgctc 455  Q
    || ||||||||||    ||||| ||||||| | || | ||||||||||||||||||| ||| |||| |||||    
T  39063300 ttcttataacagaacgcagcggcagttaacaaccgttggcaccagcggcagttaactgttgtcggattgctc 39063229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 17684744 - 17684657
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcct 373  Q
    |||||||||||||||||||| || |||||||||||||  || |||||||||| |||||||||||||||||| | ||||| ||||||||    
T  17684744 gagcgtaattgacgttgaatccgcaacaattgggaaaaatggcacctcttgatcttcaatccgcaacaatagagttttggaaactcct 17684657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 37779884 - 37779973
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    |||||||||||||||||||| || ||||||||| |||  || |||||||||| |||||||||||||||||  | ||||| ||||||||||    
T  37779884 gagcgtaattgacgttgaatccgcaacaattggaaaaaatggcacctcttgatcttcaatccgcaacaatggagttttgtaaactcctat 37779973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 14771568 - 14771513
Alignment:
Q  196 ctaatctaacatctaatcataaaatcaacaaaaccaaattatgtgacaatttaacc 251  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  14771568 ctaaactaacatctaataataaaatcaacaaaacctaattatgtgacaatttaacc 14771513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 24268801 - 24268713
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||||||||||||||||||  | |||||||||||||  || |||||||||  |||||||||||||||||  | ||||| ||||||||||    
T  24268801 gagcgtaattgacgttgaatcggcaacaattgggaaa-atggcacctcttggtcttcaatccgcaacaatggagttttggaaactcctat 24268713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 35186766 - 35186835
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||||||||||||| || |||||||||||||  || ||| || ||| |||||||||||||||||    
T  35186766 gagcgtaattgacgttgaatccgcaacaattgggaaaaatggcacatcctgatcttcaatccgcaacaat 35186835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 35585357 - 35585288
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||||||||||||| || ||||||||  |||  || |||||||||| |||||||||||||||||    
T  35585357 gagcgtaattgacgttgaatccgcaacaattgaaaaaaatggcacctcttgatcttcaatccgcaacaat 35585288  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 17293189 - 17293277
Alignment:
Q  163 cctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatcaacaaaaccaaattatgtgacaatttaacc 251  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  17293189 cctaacaattttacaacaatattatattcaactctaatctaacatctaatcataaaatcaacaaaacctaattatgtgataatttaacc 17293277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 398
Target Start/End: Original strand, 10315778 - 10315895
Alignment:
Q  281 attgggagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctatatatg 380  Q
    |||| ||||| ||| |||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||  | ||||||||||| |||| | ||    
T  10315778 attgtgagcgaaatagacgttgaatccgcaacaattgggaaattaggcacctcttgaacttcaatccgcaacaattgagttttgaaaactactatgtttg 10315877  T
Q  381 tttcgtttttataacaga 398  Q
    ||| ||| ||||||||||    
T  10315878 ttttgttcttataacaga 10315895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 45941289 - 45941379
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctata 376  Q
    |||||||||||||||||||| || |||||||||||||  || |||||||||| |||||||||||||||||  | ||||| |||||||||||    
T  45941289 gagcgtaattgacgttgaatccgcaacaattgggaaaaatggcacctcttgatcttcaatccgcaacaatggagttttggaaactcctata 45941379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 49815961 - 49815872
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||||||||||| |||||| || |||||||||||||  || ||||||||||||||||||||||||||||  | ||||| ||||||||||    
T  49815961 gagcgtaattgactttgaatccgcaacaattgggaaaaatggcacctcttgaacttcaatccgcaacaatggagttttggaaactcctat 49815872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 4910244 - 4910189
Alignment:
Q  196 ctaatctaacatctaatcataaaatcaacaaaaccaaattatgtgacaatttaacc 251  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  4910244 ctaaactaacatctaataataaaatcaacaaaacctaattatgtgacaatttaacc 4910189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 21171198 - 21171287
Alignment:
Q  287 agcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctatat 377  Q
    ||||||||||| ||||||| || ||||||||||||| | | |||||||||| |||||||||| ||||||  | ||||| ||||||||||||    
T  21171198 agcgtaattgatgttgaatccgcaacaattgggaaaatgg-cacctcttgatcttcaatccgtaacaatggagttttggaaactcctatat 21171287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 14968661 - 14968590
Alignment:
Q  286 gagcgtaattgacgttgaattcga--aacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||| ||||||||| ||   |||||||||||||  || ||||||||||||||||||||||||||||    
T  14968661 gagcgtaattaacgttgaatccgcgcaacaattgggaaaaatggcacctcttgaacttcaatccgcaacaat 14968590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 21410485 - 21410426
Alignment:
Q  163 cctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatca 222  Q
    ||||||||||  |||||||||||| |||||||||||||||| |||| |||| ||||||||    
T  21410485 cctaacaattcaacaacaatattagattcaactctaatctagcatcaaatcttaaaatca 21410426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 17293345 - 17293414
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaata 356  Q
    |||||||||||||||||||| || ||||||||| ||| ||| ||||| || || |||||||||||||||||    
T  17293345 gagcgtaattgacgttgaatccgcaacaattggaaaaattg-cacctattcaatttcaatccgcaacaata 17293414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Complemental strand, 43035898 - 43035865
Alignment:
Q  407 agttaactatcgctagcaccagcggcagttaact 440  Q
    ||||||||| ||||||||||||||||||||||||    
T  43035898 agttaactaccgctagcaccagcggcagttaact 43035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 3379733 - 3379649
Alignment:
Q  164 ctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatcaacaaaaccaaattatgtgacaattta 248  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||    
T  3379733 ctaacaattctacaacaatattatattcaactctaatctaacatcaaatcataaaatcaacaaaatctaattatgagacaattta 3379649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 15899797 - 15899711
Alignment:
Q  289 cgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||||| ||||||||| || |||||||||||||  || ||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  15899797 cgtaattcacgttgaatccgcaacaattgggaaaaatggcacctcttgaacttcaatccgcaacaatagatttttggaaactcctat 15899711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 2204267 - 2204178
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||||||||||| |||||| || |||||||||||||  || |||||||||| |||||||||||||||||  | ||||| ||||||||||    
T  2204267 gagcgtaattgacattgaatccgcaacaattgggaaaaatggcacctcttgatcttcaatccgcaacaatggagttttggaaactcctat 2204178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 4230988 - 4231036
Alignment:
Q  174 tacaacaatattatattcaactctaatctaacatctaatcataaaatca 222  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  4230988 tacaacaatattagattcaactctaatctaacatcaaatcataaaatca 4231036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 1641227 - 1641169
Alignment:
Q  164 ctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatca 222  Q
    |||| |||| ||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  1641227 ctaaaaattctacaacaatattagattcaactctaacctaacatcaaatcataaaatca 1641169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 3379573 - 3379488
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactc 371  Q
    ||||||||||| ||||||||  | ||| ||||||| | ||  ||| ||||||||||||||| |||||||| || ||||| ||||||    
T  3379573 gagcgtaattggcgttgaatctgcaacgattgggataattttcacttcttgaacttcaatctgcaacaatgaagttttggaaactc 3379488  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 13130068 - 13129995
Alignment:
Q  178 acaatattatattcaactctaatctaacatctaatcataaaatcaacaaaaccaaattatgtgacaatttaacc 251  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  13130068 acaatattatattcaactctaatctaacatcaaatcataaaatcaacaaaatctaattatgtgacaatttaacc 13129995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 23190564 - 23190624
Alignment:
Q  163 cctaacaattatacaacaatattatattcaactctaatctaacatctaatcataaaatcaa 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23190564 cctaacaattctacaacaatattatattcaactctaatctaacatcaaatcatacaatcaa 23190624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 13129919 - 13129837
Alignment:
Q  292 aattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactccta 374  Q
    ||||| |||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||  | ||||| |||||||||    
T  13129919 aattggcgttgaatccgcaacaattgggaaattttgcacctcttgaacttcaatccgcaacaatggagttttggaaactccta 13129837  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 27188880 - 27188986
Alignment:
Q  292 aattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctatatatgtttcgttttta 391  Q
    |||||||||||||| |  ||||||||  ||||||| ||||||||||||||||||||||||||||  | |||||||||||| ||| | ||||| ||| |||    
T  27188880 aattgacgttgaatccccaacaattgaaaaatttggcacctcttgaacttcaatccgcaacaatggagttttgaaaactcttatgtttgttttgttctta 27188979  T
Q  392 taacaga 398  Q
    |||||||    
T  27188980 taacaga 27188986  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 30194315 - 30194404
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    |||||||||||||||||||| || |||||||| ||||  ||||||||||||| |||||||||||||||||  | ||||| ||||||||||    
T  30194315 gagcgtaattgacgttgaatccgcaacaattgagaaaaatgacacctcttgatcttcaatccgcaacaatggagttttggaaactcctat 30194404  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 375
Target Start/End: Complemental strand, 47759396 - 47759309
Alignment:
Q  288 gcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    |||||||||||||||||| || |||||||| ||||  || |||||||||| ||||||||||||||||| || ||||| ||||||||||    
T  47759396 gcgtaattgacgttgaatccgcaacaattgagaaaaatggcacctcttgatcttcaatccgcaacaatgaagttttggaaactcctat 47759309  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 14633245 - 14633334
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||||||||| ||||||||  | |||||||||||||  ||||||||||||| |||||||||||||| ||  | ||||| ||||||||||    
T  14633245 gagcgtaattggcgttgaatctgcaacaattgggaaaaatgacacctcttgatcttcaatccgcaactatggagttttggaaactcctat 14633334  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 46412724 - 46412655
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||||| ||||||| || |||||||||||||  || |||||||||| |||||||||||||||||    
T  46412724 gagcgtaattgatgttgaatccgcaacaattgggaaaaatggcacctcttgatcttcaatccgcaacaat 46412655  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 18441834 - 18441874
Alignment:
Q  142 atcataaaatcaatacctaaacctaacaattatacaacaat 182  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  18441834 atcataaaatcaaaacctaaacctaacaattctacaacaat 18441874  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 19486908 - 19486948
Alignment:
Q  142 atcataaaatcaatacctaaacctaacaattatacaacaat 182  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  19486908 atcataaaatcaaaacctaaacctaacaattctacaacaat 19486948  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 3589034 - 3588981
Alignment:
Q  166 aacaattatacaacaatattatattcaactctaatctaacatctaatcataaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3589034 aacaattatacaacaatattatattcaactctaatctaacatgtaatcataaaa 3588981  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 42167399 - 42167330
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||||||||||||| || |||||||||||||  || |||||||||| |||||||||||||||||    
T  42167399 gagcgtaattgacgttgaatccgcaacaattgggaaaaatggcacctcttgatcttcaatccgcaacaat 42167330  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 3588923 - 3588854
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaat 355  Q
    |||||||||||||||||||| |  |||||||| ||| |||| ||||||||||||| ||||||||||||||    
T  3588923 gagcgtaattgacgttgaatccacaacaattgagaattttggcacctcttgaactacaatccgcaacaat 3588854  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 14120274 - 14120314
Alignment:
Q  142 atcataaaatcaatacctaaacctaacaattatacaacaat 182  Q
    ||||||||||||| | ||||||||||||||| |||||||||    
T  14120274 atcataaaatcaaaatctaaacctaacaattctacaacaat 14120314  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 33405598 - 33405687
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctat 375  Q
    ||||| ||||||| |||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||  | ||||| ||||||||||    
T  33405598 gagcgaaattgacattgaatccataacaattgggaaatttggcacctcttgaacttcaatccgcaacaatggagttttggaaactcctat 33405687  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 6978604 - 6978694
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctata 376  Q
    |||||||||||||||||||| || |||||||||||||  || ||||| ||||  ||||||| ||||||||  | ||||| |||||||||||    
T  6978604 gagcgtaattgacgttgaatccgcaacaattgggaaaaatggcaccttttgattttcaatcagcaacaatggagttttggaaactcctata 6978694  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 19507933 - 19507896
Alignment:
Q  403 cggtagttaactatcgctagcaccagcggcagttaact 440  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19507933 cggtagttaactaccgctagcaccagcggcagttaact 19507896  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 32133057 - 32132967
Alignment:
Q  286 gagcgtaattgacgttgaattcgaaacaattgggaaatttgacacctcttgaacttcaatccgcaacaataaaattttgaaaactcctata 376  Q
    |||||||||||||||||||| |  ||||||| |||||  || ||||||||||||||||||||||||||||  | ||||| |||||||||||    
T  32133057 gagcgtaattgacgttgaatccacaacaatttggaaaaatggcacctcttgaacttcaatccgcaacaatggagttttggaaactcctata 32132967  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 5972295 - 5972263
Alignment:
Q  216 aaaatcaacaaaaccaaattatgtgacaattta 248  Q
    ||||||||||||||| |||||||||||||||||    
T  5972295 aaaatcaacaaaacctaattatgtgacaattta 5972263  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 8711839 - 8711871
Alignment:
Q  216 aaaatcaacaaaaccaaattatgtgacaattta 248  Q
    ||||||||||||||| |||||||||||||||||    
T  8711839 aaaatcaacaaaacctaattatgtgacaattta 8711871  T

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Target: scaffold0859 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 1878 - 1917
Alignment:
Q  142 atcataaaatcaatacctaaacctaacaattatacaacaa 181  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  1878 atcataaaatcaaaacctaaacctaacaattctacaacaa 1917  T

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Target: scaffold0146 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 24569 - 24522
Alignment:
Q  401 agcggtagttaactatcgctagcaccagcggcagttaactattgccgg 448  Q
    ||||| ||||||||| |||| ||||||||||||||||||| |||||||    
T  24569 agcggcagttaactaccgctggcaccagcggcagttaactgttgccgg 24522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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