View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_22 (Length: 327)
Name: NF3985_high_22
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 938465 - 938187
Alignment:
| Q |
36 |
ataaaataagtcaacccagacagactcatagttcatagttataccctatgaagcattgacatagacatagacacatgattagatgtgtcagtgcggtgtc |
135 |
Q |
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| T |
938465 |
ataaaataagtcaagccagacagactcatagttcatagttataccctatgaagcattgacatagacatagacacatgattagatgtgtcagtgcggtgtc |
938366 |
T |
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| Q |
136 |
ggtattagacactaacacgtgtcaaacaccggacacgccttcaattaaaagtgtcagtgttacaacaagtaatgtcgatattgaactcataaatcattca |
235 |
Q |
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| T |
938365 |
ggtattagacactaacacgtgtcgaacaccggacacgccttcaattaaaagtgtcagtgctacaacaagtaatgtctatattgaactcataaatcattca |
938266 |
T |
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| Q |
236 |
atactatacgttagccattatgattcatcaaatgtgtgagaacattgcatgttgtatacttctatctgccggtgcccct |
314 |
Q |
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| T |
938265 |
atactatacgttagccattatgattcatcaaatgtgtgagaacattgcatgttgtatacttctatctgccagtgcccct |
938187 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 46266452 - 46266508
Alignment:
| Q |
143 |
gacactaacacgtgtcaaacaccggacacgccttcaattaaaagtgtcagtgttaca |
199 |
Q |
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| T |
46266452 |
gacactaacatgtgtcagacaccggacacaccttcaatttgagatgtcagtgttaca |
46266508 |
T |
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