View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_24 (Length: 314)
Name: NF3985_high_24
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9566532 - 9566233
Alignment:
| Q |
1 |
tcccttttaatttgagtttggaaaccgtgattttcacattgaatgtgacgactttaaagctaaaattgggaatgttgagcaaccgcgttcgcgtggtggc |
100 |
Q |
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| T |
9566532 |
tcccttttaatttgagtttggaaaccgtgattttcacatcgaatgtgacgactttgaagctaaaattgggaatgttgagcaaccgcgtccgcgtggtggc |
9566433 |
T |
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| Q |
101 |
aagtccgtgccgcatttcctagttcatgccacatttccaaacacaacaataacatgaatgaacacattgaacagcctcaaatattaagagactcgtgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9566432 |
aagtccgtgccgcatttcctagttcatgccacatttccaaacacaacaataacatgaatgaacacattgaacagcctcaaatattaagagactcatgtag |
9566333 |
T |
|
| Q |
201 |
aaaacttctctaagattttattttcttcaaaagaaaacaataacatgttggttcctatatgcaaatctcatgaattggttaatatatatcatgagttgtg |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9566332 |
aaaacttctctaagattttattttcttcagaagaaaacaataacatgttggttcctatatgcaaatctcatgaattggttaatatatatcatgagttgtg |
9566233 |
T |
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