View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_27 (Length: 301)
Name: NF3985_high_27
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 14293957 - 14294241
Alignment:
| Q |
2 |
cttatataatctgaacagtaagtttttacgccccatgcagacgcacttaggctacatggaggtatggcatttggggcatttcggactgtataagtcgaga |
101 |
Q |
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| T |
14293957 |
cttatataatctgaacagtaagtttttacgccccatgcagacgtacttaggctacatggaggtatggtgtttggggcatttcggattgtataagtcgaga |
14294056 |
T |
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| Q |
102 |
taaatatatatgttttgtcttatataatctgaaac--ttctcaaaaccagaacataatacannnnnnnnnncgttttctactgcactccaactaacaatt |
199 |
Q |
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| T |
14294057 |
taaatatatatgttttgtcttatataatctgaaacaattctcaaaaccagaacataatac---gtttttttcgttttcttctgcactccaactaacaatt |
14294153 |
T |
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| Q |
200 |
ttgtatacaatctaggaccgttcaaagatctagctgtttatgaaagaacagtttcgacactttattttttcaagagacgacctctatg |
287 |
Q |
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| T |
14294154 |
ttgtatacaatctagtaccgttcaaagatctagttgtttatgaaagaacagtttcaacagtttattttttccagagacaacctctatg |
14294241 |
T |
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