View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_29 (Length: 289)
Name: NF3985_high_29
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 45547587 - 45547851
Alignment:
| Q |
12 |
tcatcaacttctggtatgttgtgcatcctagcatcctttgaacgatttctcgtcaacctcaaacaaaaatcagaagttatattttgttcaactaaatcac |
111 |
Q |
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| T |
45547587 |
tcatcaacttctggtatgttgtgcatcctagcatcctttgaacgatttctcgtcaacctcaaacaaaaatcagatgttacattttgttcaactaaatcac |
45547686 |
T |
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| Q |
112 |
gaacttttctgaaattctttgcgagacgattatgtctatcaatcatctgcgttgcttgggaaatattacgtaacagggtag------nnnnnnnnngttc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45547687 |
gaacttttctgaaattctttgcgagacgattatgtctatcaatcatctgcgttgcttgggaaatattacgtaacagggtagctttcttttttttttcttc |
45547786 |
T |
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| Q |
206 |
cggttttggccatgggaaatctgatgttatattttgttcaactaaatctccgataatatcccttt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547787 |
atgttttggccatgggaaatctgatgttatattttgttcaactaaatctccgataatatcccttt |
45547851 |
T |
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