View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3985_high_39 (Length: 250)
Name: NF3985_high_39
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36639795 - 36640031
Alignment:
| Q |
1 |
aacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcatcacccatcattctaatttctaatttttaattattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639795 |
aacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcaacacccatcattctaatttctaatttttaattattaa |
36639894 |
T |
|
| Q |
101 |
atccttaaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaacctagctacgtatctccaatatttataatggct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639895 |
atccttgaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaacctagctacgtatctccaatatttataatggct |
36639994 |
T |
|
| Q |
201 |
tctaagttcatcttttcttctgtctttttacttgttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639995 |
tctaagttcatcttttcttctgtctttttacttgttc |
36640031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University