View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_40 (Length: 250)
Name: NF3985_high_40
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 938190 - 937953
Alignment:
| Q |
1 |
ccctttgttatgtgtttgatttgatatgataaattggagcagctactgaacatttatgtgctagccactcatttcactaaccatctagaatgatcattgt |
100 |
Q |
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| T |
938190 |
ccctttgttatgtgtttgatttaatatgataaattggagcagctactgaacatttatgtgctagccactcatttcactaaccatctagaatgatcattgt |
938091 |
T |
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| Q |
101 |
tgctacaagcttaaataggtttgtttatttatcctcatataatgaaggaaatgcacaatttctatttcatttacattagtacatgatttgtatagtttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
938090 |
tgctacaagcttaaataggtttgtttatttatcctcatataatgaaggaaatgcacaatttctatttcatttacattagtacatgatttg--tagtttaa |
937993 |
T |
|
| Q |
201 |
caaactttctctaattttcagcttctatattatacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
937992 |
caaactttctctaattttcagcttctatattatatctttg |
937953 |
T |
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