View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_high_44 (Length: 238)
Name: NF3985_high_44
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 30404149 - 30404012
Alignment:
| Q |
63 |
tagaataacattaaagataccattatatgtaggactctcaactttgaccctaaagcagcaagccatgaacatagaactaattcaagaacaaagaactctt |
162 |
Q |
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| T |
30404149 |
tagaataacattaatgataccattatgtttagaagtctcaactttgaccctaaagcagcaagccatgaacatagaagtaattcaagaacaaagaactctt |
30404050 |
T |
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| Q |
163 |
ggattggaccccttcttgtctcttgttaattctcagtg |
200 |
Q |
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| T |
30404049 |
ggattggaccccttcttgtctctttttaattttcagtg |
30404012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 30410718 - 30410574
Alignment:
| Q |
63 |
tagaataacattaaagataccattatatgtaggactctcaactttgaccct------aaagcagcaagccatgaacatagaactaattcaagaacaaaga |
156 |
Q |
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| T |
30410718 |
tagaataacattaatgataccattatgtgtaggactctcaactttgacccttcctctaaagcagcaagccatgaacataaaactaattcaagaacaaaga |
30410619 |
T |
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| Q |
157 |
actcttggattggaccccttcttgtctcttgttaattctcagtgt |
201 |
Q |
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| T |
30410618 |
actcttggattggacctcttcttgtctcttgttaattttcagtgt |
30410574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 30407886 - 30407775
Alignment:
| Q |
63 |
tagaataacattaaagataccattatatgtaggactctcaactttgaccct------aaagcagcaagccatgaacatagaactaattcaagaacaaaga |
156 |
Q |
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||||||||||||| |||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30407886 |
tagaataacattagccataccattatgtgtaggattttcaactttgacccttgcactaaagcagcaagccatgaacataaaactaattcaagaacaaaga |
30407787 |
T |
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| Q |
157 |
actcttggattg |
168 |
Q |
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||| |||||||| |
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| T |
30407786 |
acttttggattg |
30407775 |
T |
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