View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_high_9 (Length: 480)

Name: NF3985_high_9
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_high_9
NF3985_high_9
[»] chr8 (8 HSPs)
chr8 (32-328)||(27128779-27129075)
chr8 (364-463)||(27128678-27128777)
chr8 (44-137)||(24962337-24962430)
chr8 (44-137)||(43191449-43191542)
chr8 (44-137)||(43980555-43980648)
chr8 (44-137)||(34157958-34158051)
chr8 (44-107)||(33385317-33385380)
chr8 (44-137)||(26878700-26878793)
[»] chr5 (5 HSPs)
chr5 (44-137)||(4857464-4857557)
chr5 (44-137)||(27642543-27642636)
chr5 (44-137)||(39690456-39690549)
chr5 (44-124)||(38972097-38972177)
chr5 (44-124)||(10523244-10523324)
[»] chr1 (11 HSPs)
chr1 (44-124)||(291605-291685)
chr1 (363-441)||(32602980-32603058)
chr1 (83-137)||(40702458-40702512)
chr1 (44-137)||(32152198-32152291)
chr1 (33-126)||(40612918-40613011)
chr1 (44-137)||(15179450-15179543)
chr1 (44-137)||(15512751-15512844)
chr1 (44-137)||(28948934-28949027)
chr1 (44-124)||(8877825-8877905)
chr1 (44-124)||(8984631-8984711)
chr1 (44-137)||(3831087-3831180)
[»] chr6 (3 HSPs)
chr6 (44-137)||(19838972-19839065)
chr6 (83-137)||(31152999-31153053)
chr6 (44-124)||(197423-197503)
[»] chr4 (8 HSPs)
chr4 (45-124)||(3684159-3684239)
chr4 (44-138)||(37625096-37625190)
chr4 (44-137)||(20291381-20291474)
chr4 (70-137)||(12624737-12624804)
chr4 (81-135)||(5168022-5168076)
chr4 (50-124)||(14602632-14602706)
chr4 (33-130)||(41459635-41459732)
chr4 (44-124)||(29584948-29585028)
[»] chr2 (8 HSPs)
chr2 (31-127)||(2654352-2654448)
chr2 (44-137)||(17663665-17663758)
chr2 (44-137)||(43709960-43710053)
chr2 (33-137)||(16808783-16808887)
chr2 (33-137)||(16848064-16848168)
chr2 (44-122)||(2917072-2917150)
chr2 (70-138)||(26512111-26512179)
chr2 (44-124)||(28733877-28733957)
[»] chr3 (8 HSPs)
chr3 (83-125)||(44647828-44647870)
chr3 (373-441)||(20873024-20873091)
chr3 (80-127)||(383656-383703)
chr3 (44-135)||(51263124-51263215)
chr3 (44-137)||(48903056-48903149)
chr3 (83-127)||(38668536-38668580)
chr3 (44-124)||(44338134-44338214)
chr3 (44-124)||(50363080-50363160)
[»] scaffold0005 (1 HSPs)
scaffold0005 (50-124)||(214672-214746)
[»] chr7 (5 HSPs)
chr7 (70-136)||(23876079-23876145)
chr7 (83-124)||(26830132-26830173)
chr7 (80-124)||(6376140-6376184)
chr7 (44-124)||(21388296-21388376)
chr7 (44-124)||(40263765-40263845)
[»] scaffold0116 (1 HSPs)
scaffold0116 (83-127)||(5903-5947)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 32 - 328
Target Start/End: Complemental strand, 27129075 - 27128779
Alignment:
Q  32 caaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27129075 caaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcat 27128976  T
Q  132 aaaataaggaggggaggtgtaattttcaatctacaaattataagactatgcttgaattattaaaaatcacaacaaccaccatgtttgttgtcatggaata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27128975 aaaataaggaggggaggtgtaattttcaatctacaaattataatactatgcttgaattattaaaaatcacaacaaccaccatgtttgttgtcatggaata 27128876  T
Q  232 tgcacaattgaccgaactatttgatcaatcacttgtgctattgcgtgttttcttttccttagaattagaatgtttttcttccaacatggaagatgaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27128875 tgcacaattgaccgaactatttgatcaatcacttgtgctattgcgtgttttcttttctttagaattagaatgtttttcttccaacatggaagatgaa 27128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 364 - 463
Target Start/End: Complemental strand, 27128777 - 27128678
Alignment:
Q  364 ttatagtagataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaattaacgatcgaagtaacaaatt 463  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  27128777 ttatagcagataacttataagttagcttatatccgataacgaataagataacttattgaatttttaatgtttagtaaattaacgatcgaagtaataaatt 27128678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 24962337 - 24962430
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| |||||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  24962337 taattaatcctactaatttgtcttgaaatacaaaaagttaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 24962430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 43191449 - 43191542
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || ||||||||||||  ||||  |||  ||||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  43191449 taattaatcctactaacttatcttgaaatatgaaaatttaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 43191542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 43980555 - 43980648
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||| | |||||||||||||| || |||||||||    
T  43980555 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaatgataatttagtaatattaacacataaaata 43980648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 34158051 - 34157958
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| |  ||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  34158051 taattaatcctactaatttgtcttaaaatacaaaaagccaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 34157958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 33385380 - 33385317
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaat 107  Q
    ||||||||||| ||||||| ||||  ||||| ||| || ||||| |||||||||||||||||||    
T  33385380 taattaatactactaacttgtcttgaaatacgaaaagtcaaatttaatatacatataaacaaat 33385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 26878700 - 26878793
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| ||||||||||||  ||||   || || ||||| |||||||||| |||||||  ||||||| |||||||| || || ||||||    
T  26878700 taattaatactactaacttatcttgaaatatgtaaagtcaaatttaatatacatacaaacaaaggacaatttggtaatattaacacacaaaata 26878793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 4857464 - 4857557
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  4857464 taattaatactactaacttatcttaaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 4857557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 27642636 - 27642543
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||  | |||||||||||||| || |||||||||    
T  27642636 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggataatttagtaatattaacacataaaata 27642543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 39690456 - 39690549
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  39690456 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 39690549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 38972097 - 38972177
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||  ||||||| ||||||||    
T  38972097 taattaatactactaacttatcttgaaatataaaaagtcaaatttaatacacatacaaacaaaggacaatttggtaatatt 38972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 10523244 - 10523324
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||| ||||  |||| |||  || ||||| |||| ||||| ||||||| |||||||| ||||||||    
T  10523244 taattaatactactaacttgtcttgaaatataaatagtcaaatttaatacacataaaaacaaaaaacaatttggtaatatt 10523324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 291605 - 291685
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||||||||  |||| |||| |||||||| |||| | ||| |||||||| ||||||||||||||||    
T  291605 taattaatactactaacttatcttaaaatataaaaagttaaatttaatacaaatacaaacaaatgacaatttagtaatatt 291685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 32603058 - 32602980
Alignment:
Q  363 cttatagtagataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaa 441  Q
    |||||||||||| |||||||||||| |||||| ||||||  ||||||  || || ||||||||| ||||||||||||||    
T  32603058 cttatagtagatgacttataagttaacttatagccgatagcgaataaattagctgattgaatttgtagtgtttagtaaa 32602980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 40702512 - 40702458
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  40702512 aaattcaatacacatataaacaaaaaacaatttaataatattcacgcataaaata 40702458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 32152291 - 32152198
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||||||||||| |||||||| || || ||||||    
T  32152291 taattaatactactaacttatcttaaaatatgaaaagtcaaatttaatacacatacaaacaaataacaatttggtaatattaacacacaaaata 32152198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 40612918 - 40613011
Alignment:
Q  33 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattca 126  Q
    |||||||||| ||||||||||| |||||||||  |  ||||  ||| || |||||||||| |||| |||||||| || ||||||||||||||||    
T  40612918 aaatataaccctaattaatactactaacttataatgaaatatgaaaagtcaaattaaatacacatttaaacaaagaataatttagtaatattca 40613011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 15179543 - 15179450
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || ||||||| ||||  ||||| ||| || ||||| |||| ||||| |||||||  ||||||| |||||||| ||||||||||||    
T  15179543 taattaatcctactaacttgtcttgaaatacgaaaagtcaaatttaatacacatacaaacaaaggacaattttgtaatatttacgcataaaata 15179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 15512751 - 15512844
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  15512751 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 15512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 28948934 - 28949027
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  28948934 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 28949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 8877905 - 8877825
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||| ||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  8877905 taattaatactactatcttatcttgaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttcgtaatatt 8877825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 8984631 - 8984711
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| |||| |||||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||||||||||||    
T  8984631 taattaatactactaatttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttagtaatatt 8984711  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 3831180 - 3831087
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||||||| ||| ||||  ||||  ||| || ||||| || ||||||| |||||||| ||||||| |||||||| || || ||||||    
T  3831180 taattaatacttctatcttgtcttgaaatatgaaaagtcaaatttaacatacatacaaacaaatgacaatttcgtaatattaacacacaaaata 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 19839065 - 19838972
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  19839065 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 19838972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 31152999 - 31153053
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||  ||||||||    
T  31152999 aaatttaatacacatacaaacaaataacaatttagtaatattgacatataaaata 31153053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 197423 - 197503
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||| ||||  |||  ||||  ||||||| |||| ||||| |||||||| |||||||| |||||||    
T  197423 taattaatactactaacttgtcttaaaattgaaaaaattaaatttaatacacatacaaacaaatgacaatttaataatatt 197503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 3684159 - 3684239
Alignment:
Q  45 aattaatacttctaacttatcttctaatac-aaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    |||||||||| ||||||||||||  ||||  |||| |||||||| ||||||||||||||||||| | |||||| |||||||    
T  3684159 aattaatactactaacttatcttgaaatatgaaaacgttaaatttaatatacatataaacaaatgataatttaataatatt 3684239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 37625096 - 37625190
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaataa 138  Q
    ||||||||||| |||||| |||||  ||||  ||| || ||||| |||| |||||||||||||| | |||||||||||||| || || |||||||    
T  37625096 taattaatactactaactaatcttgaaatatgaaaagtcaaatttaatacacatataaacaaatgataatttagtaatattaacacacaaaataa 37625190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 20291474 - 20291381
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||| | |||||||||||||| || || ||||||    
T  20291474 taattaatactactaacttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgataatttagtaatattaacccacaaaata 20291381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 12624804 - 12624737
Alignment:
Q  70 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  12624804 aatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 12624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 5168076 - 5168022
Alignment:
Q  81 ttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaa 135  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||| ||||| ||||    
T  5168076 ttaaatttaatacacatacaaacaaatgacaatttagtaatattaacgcacaaaa 5168022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 14602632 - 14602706
Alignment:
Q  50 atacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  14602632 atactactaacttatcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 14602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 41459732 - 41459635
Alignment:
Q  33 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgca 130  Q
    ||||| |||| ||||||||||| ||||||| || |  ||||  ||| || ||||| |||| ||||||||| |||  |||||||||||||||| |||||    
T  41459732 aaatacaaccctaattaatactactaacttgtcatgaaatatgaaaagtcaaatttaatacacatataaataaaagacaatttagtaatattaacgca 41459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 29585028 - 29584948
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    |||||||||||  |||||| ||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  29585028 taattaatactattaacttgtcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 29584948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 2654448 - 2654352
Alignment:
Q  31 tcaaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcac 127  Q
    ||||| |||||| |||||||||||  |||||||||||  ||||  |||  | |||||||||| |||||||||||||  |||||||||||| ||||||    
T  2654448 tcaaacataaccctaattaatactattaacttatcttaaaatatgaaaaatcaaattaaatacacatataaacaaaagacaatttagtaacattcac 2654352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 17663758 - 17663665
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  17663758 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 17663665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 43710053 - 43709960
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| ||||||||||||  |||| |||| || || || |||| |||||||||||||  |||||| ||||||||| || || ||||||    
T  43710053 taattaatactactaacttatcttgaaatataaaaagtaaattttaatacacatataaacaaaggacaattaagtaatattaacacacaaaata 43709960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 16808783 - 16808887
Alignment:
Q  33 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcata 132  Q
    ||||||| || ||||| ||||| ||||||| ||||  ||||  |||  |||| || |||||||||| |||||||| |||||||||||||||| |  ||||    
T  16808783 aaatatatccctaatttatactactaacttgtcttgaaatatgaaaaattaattttaatatacatacaaacaaatgacaatttagtaatattaatacata 16808882  T
Q  133 aaata 137  Q
    |||||    
T  16808883 aaata 16808887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 16848064 - 16848168
Alignment:
Q  33 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcata 132  Q
    ||||||| || ||||| ||||| ||||||| ||||  ||||  |||  |||| || |||||||||| |||||||| |||||||||||||||| |  ||||    
T  16848064 aaatatatccctaatttatactactaacttgtcttgaaatatgaaaaattaattttaatatacatacaaacaaatgacaatttagtaatattaatacata 16848163  T
Q  133 aaata 137  Q
    |||||    
T  16848164 aaata 16848168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 2917072 - 2917150
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaata 122  Q
    ||||||||||| ||||||| ||||  |||| |||| |||||||| |||| ||||| |||||||  |||||||| |||||    
T  2917072 taattaatactactaacttgtcttaaaatataaaaagttaaatttaatacacatacaaacaaaagacaatttattaata 2917150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 26512179 - 26512111
Alignment:
Q  70 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaataa 138  Q
    |||| |||| || ||||| |||| ||||| |||||||  |||||||||||||||| || ||||||||||    
T  26512179 aatataaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaataa 26512111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28733957 - 28733877
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| |||| |||||||  |||| |||| || |||||  ||| ||||| |||||||| ||||||| ||||||||    
T  28733957 taattaatactactaatttatcttgaaatataaaaagtcaaattttatacacatacaaacaaatgacaatttggtaatatt 28733877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 44647870 - 44647828
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatattc 125  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  44647870 aaattaaatacacatataaacaaatgacaatttagtaatattc 44647828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 20873024 - 20873091
Alignment:
Q  373 ataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaa 441  Q
    |||||||||||||||||||||| | ||||  | ||||| || ||||||||||||||||||||| |||||    
T  20873024 ataacttataagttagcttataactgatag-gcataagttagcttattgaatttttagtgtttggtaaa 20873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 383703 - 383656
Alignment:
Q  80 gttaaattaaatatacatataaacaaataacaatttagtaatattcac 127  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||||    
T  383703 gttaaattaaatacacatataaacaaatgataatttagtaaaattcac 383656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 51263215 - 51263124
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaa 135  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||  |||||||||||||| | || |||||||    
T  51263215 taattaatactactaacttatctttaaatatgaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatactaacacataaaa 51263124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 48903056 - 48903149
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 137  Q
    ||||||||||| |||| || ||||  ||||  ||| || ||||| |||||| ||| |||||||| |||||||||||||||| || || ||||||    
T  48903056 taattaatactactaatttttcttgaaatattaaaagtcaaatttaatatatatacaaacaaatgacaatttagtaatattaacacacaaaata 48903149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 38668536 - 38668580
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatattcac 127  Q
    |||||||||| ||||||||| |||| |||||||||||| ||||||    
T  38668536 aaattaaatacacatataaataaatgacaatttagtaaaattcac 38668580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 44338214 - 44338134
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||| | ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||  ||||||| ||||||||    
T  44338214 taattaatagtactaacttatcttgaaatataaaaagtcaaatttaatacacatagaaacaaaggacaatttggtaatatt 44338134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 50363160 - 50363080
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||| ||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  50363160 taattaatactactaacttgtcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 50363080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 214746 - 214672
Alignment:
Q  50 atacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  214746 atactactaacttatcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 214672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 23876145 - 23876079
Alignment:
Q  70 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaat 136  Q
    ||||| ||| |||||||| |||| ||||| |||||||  |||||||||||||||| || ||||||||    
T  23876145 aatacgaaaagttaaatttaatacacatacaaacaaaagacaatttagtaatattaacacataaaat 23876079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 26830132 - 26830173
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    |||||||||| |||||||||||||| | ||||||||||||||    
T  26830132 aaattaaatacacatataaacaaatgataatttagtaatatt 26830173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 6376140 - 6376184
Alignment:
Q  80 gttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    |||||||| |||| ||||| |||||||| ||||||||||||||||    
T  6376140 gttaaatttaatacacatacaaacaaatgacaatttagtaatatt 6376184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 21388376 - 21388296
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||||||||||||  |||   ||| || ||||| |||| ||||| |||||||  ||||||||||||||||    
T  21388376 taattaatactactaacttatcttaaaatttgaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatatt 21388296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 40263845 - 40263765
Alignment:
Q  44 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 124  Q
    ||||||||||| ||| ||||||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  40263845 taattaatactactatcttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaattttgtaatatt 40263765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 5903 - 5947
Alignment:
Q  83 aaattaaatatacatataaacaaataacaatttagtaatattcac 127  Q
    |||||||||| |||||| |||||| ||||||||||||| ||||||    
T  5903 aaattaaatacacatatgaacaaagaacaatttagtaaaattcac 5947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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