View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_low_1 (Length: 741)

Name: NF3985_low_1
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_low_1
NF3985_low_1
[»] chr4 (31 HSPs)
chr4 (18-712)||(23599142-23599848)
chr4 (25-79)||(54786990-54787044)
chr4 (19-79)||(21004012-21004072)
chr4 (28-79)||(22624473-22624524)
chr4 (26-74)||(40952552-40952600)
chr4 (19-79)||(54787054-54787114)
chr4 (20-79)||(51834539-51834598)
chr4 (28-74)||(21003953-21003999)
chr4 (26-74)||(39754112-39754160)
chr4 (26-74)||(40952618-40952666)
chr4 (17-72)||(23599849-23599904)
chr4 (19-74)||(25856082-25856137)
chr4 (19-74)||(30279212-30279267)
chr4 (19-74)||(51126118-51126173)
chr4 (19-74)||(51126177-51126232)
chr4 (77-111)||(315701-315735)
chr4 (77-111)||(6555883-6555917)
chr4 (25-82)||(20542807-20542865)
chr4 (37-79)||(22624431-22624473)
chr4 (25-79)||(33659850-33659904)
chr4 (25-79)||(44639754-44639808)
chr4 (25-79)||(51834609-51834663)
chr4 (25-74)||(12721658-12721707)
chr4 (25-74)||(12721724-12721773)
chr4 (25-74)||(13743936-13743985)
chr4 (25-74)||(17659478-17659527)
chr4 (19-72)||(20542875-20542928)
chr4 (25-74)||(29978505-29978554)
chr4 (25-74)||(41788934-41788983)
chr4 (25-74)||(48079529-48079578)
chr4 (25-74)||(52256820-52256869)
[»] scaffold0756 (2 HSPs)
scaffold0756 (19-79)||(3590-3650)
scaffold0756 (25-79)||(3526-3580)
[»] scaffold0542 (2 HSPs)
scaffold0542 (19-79)||(3422-3482)
scaffold0542 (25-79)||(3492-3546)
[»] chr8 (14 HSPs)
chr8 (19-79)||(14052966-14053026)
chr8 (25-79)||(19293024-19293078)
chr8 (19-79)||(33934087-33934147)
chr8 (19-79)||(19293088-19293148)
chr8 (25-72)||(9303319-9303366)
chr8 (25-79)||(40962068-40962122)
chr8 (25-73)||(9578452-9578500)
chr8 (25-79)||(14053036-14053090)
chr8 (25-79)||(42631857-42631909)
chr8 (25-79)||(43484010-43484064)
chr8 (25-74)||(32480274-32480323)
chr8 (25-74)||(37922825-37922874)
chr8 (25-74)||(37922890-37922939)
chr8 (25-74)||(38883959-38884008)
[»] chr2 (31 HSPs)
chr2 (19-79)||(37396276-37396336)
chr2 (19-79)||(4637015-4637075)
chr2 (20-79)||(5580323-5580382)
chr2 (28-79)||(37396212-37396263)
chr2 (25-79)||(4637085-4637139)
chr2 (26-74)||(9071218-9071266)
chr2 (19-79)||(40534450-40534510)
chr2 (29-79)||(15178022-15178072)
chr2 (25-74)||(9071283-9071332)
chr2 (25-74)||(34911111-34911160)
chr2 (26-74)||(33150088-33150136)
chr2 (25-79)||(5580258-5580312)
chr2 (29-79)||(9895264-9895314)
chr2 (77-111)||(31964544-31964578)
chr2 (25-79)||(32070539-32070593)
chr2 (25-79)||(38262063-38262117)
chr2 (25-74)||(2795388-2795437)
chr2 (25-74)||(4898178-4898227)
chr2 (25-74)||(4898243-4898292)
chr2 (25-74)||(4945572-4945621)
chr2 (25-74)||(4945637-4945686)
chr2 (25-74)||(9665191-9665240)
chr2 (25-74)||(9709671-9709720)
chr2 (25-74)||(20195367-20195416)
chr2 (25-74)||(25668424-25668473)
chr2 (25-74)||(26567649-26567698)
chr2 (25-74)||(34911176-34911225)
chr2 (25-74)||(36490557-36490606)
chr2 (25-74)||(37486077-37486126)
chr2 (25-74)||(40340547-40340596)
chr2 (25-74)||(40534667-40534716)
[»] chr3 (18 HSPs)
chr3 (28-79)||(1043915-1043966)
chr3 (19-79)||(1043995-1044055)
chr3 (19-79)||(22528860-22528920)
chr3 (25-79)||(22995774-22995828)
chr3 (25-74)||(19678975-19679024)
chr3 (25-74)||(24599957-24600006)
chr3 (19-79)||(54726063-54726123)
chr3 (19-73)||(4181944-4181999)
chr3 (25-79)||(18480954-18481008)
chr3 (25-79)||(22528930-22528984)
chr3 (28-74)||(32998549-32998595)
chr3 (25-79)||(34935546-34935600)
chr3 (25-79)||(52638042-52638095)
chr3 (25-71)||(52638111-52638157)
chr3 (25-79)||(54726133-54726187)
chr3 (25-74)||(26770799-26770848)
chr3 (25-74)||(44435187-44435236)
chr3 (25-74)||(53717975-53718024)
[»] chr7 (19 HSPs)
chr7 (25-79)||(31549801-31549855)
chr7 (25-79)||(31549871-31549925)
chr7 (25-79)||(39970165-39970219)
chr7 (20-72)||(1741895-1741947)
chr7 (19-79)||(40211224-40211284)
chr7 (25-79)||(3838127-3838181)
chr7 (25-79)||(40211160-40211214)
chr7 (25-79)||(47778437-47778491)
chr7 (26-79)||(32941856-32941909)
chr7 (25-72)||(8334314-8334361)
chr7 (19-74)||(37066195-37066250)
chr7 (25-79)||(20353065-20353119)
chr7 (25-74)||(19531966-19532015)
chr7 (25-74)||(27940758-27940807)
chr7 (25-74)||(28003256-28003305)
chr7 (25-74)||(35593719-35593768)
chr7 (25-74)||(37066260-37066309)
chr7 (25-74)||(46477146-46477195)
chr7 (26-71)||(47778508-47778553)
[»] chr5 (27 HSPs)
chr5 (25-79)||(30778078-30778132)
chr5 (25-79)||(9005025-9005079)
chr5 (25-79)||(14642024-14642078)
chr5 (14-79)||(16985333-16985398)
chr5 (20-78)||(12442774-12442832)
chr5 (25-79)||(17096521-17096575)
chr5 (25-74)||(7581463-7581512)
chr5 (25-74)||(39602982-39603031)
chr5 (19-79)||(17096451-17096511)
chr5 (27-79)||(22565676-22565728)
chr5 (19-79)||(22584304-22584364)
chr5 (19-79)||(29807086-29807146)
chr5 (20-79)||(7164851-7164910)
chr5 (19-74)||(18942058-18942113)
chr5 (26-72)||(11773535-11773581)
chr5 (20-74)||(14642089-14642143)
chr5 (25-74)||(7336933-7336982)
chr5 (25-74)||(15966034-15966083)
chr5 (25-74)||(19784547-19784596)
chr5 (25-74)||(19784601-19784650)
chr5 (25-74)||(20207174-20207223)
chr5 (25-74)||(26168266-26168315)
chr5 (25-74)||(27304815-27304864)
chr5 (25-74)||(33696733-33696782)
chr5 (19-72)||(35172502-35172555)
chr5 (25-74)||(35245604-35245653)
chr5 (25-74)||(35245686-35245735)
[»] chr6 (13 HSPs)
chr6 (28-79)||(2033250-2033301)
chr6 (19-82)||(256151-256215)
chr6 (25-75)||(2033181-2033231)
chr6 (25-79)||(1858355-1858409)
chr6 (26-72)||(27082395-27082441)
chr6 (25-74)||(7246897-7246945)
chr6 (25-74)||(7418888-7418937)
chr6 (25-74)||(10731551-10731600)
chr6 (25-74)||(11989159-11989208)
chr6 (25-74)||(11989220-11989269)
chr6 (25-74)||(32786129-32786178)
chr6 (25-74)||(32786194-32786243)
chr6 (25-74)||(33169260-33169309)
[»] chr1 (33 HSPs)
chr1 (19-77)||(13219491-13219549)
chr1 (25-79)||(38190926-38190980)
chr1 (19-72)||(35049947-35050000)
chr1 (19-79)||(43384492-43384551)
chr1 (28-79)||(12030312-12030363)
chr1 (28-79)||(38190856-38190907)
chr1 (20-79)||(49979951-49980010)
chr1 (25-79)||(13219425-13219479)
chr1 (25-79)||(46580834-46580888)
chr1 (19-79)||(40960811-40960871)
chr1 (35-79)||(50144147-50144191)
chr1 (19-74)||(31909762-31909817)
chr1 (25-79)||(21909849-21909903)
chr1 (25-79)||(37255134-37255188)
chr1 (25-79)||(47011322-47011376)
chr1 (25-79)||(49979890-49979944)
chr1 (25-79)||(50144217-50144271)
chr1 (25-74)||(5852701-5852750)
chr1 (25-74)||(6763412-6763461)
chr1 (25-74)||(8751445-8751494)
chr1 (25-74)||(8751510-8751559)
chr1 (25-77)||(12993629-12993681)
chr1 (25-74)||(17988235-17988284)
chr1 (26-79)||(21909920-21909973)
chr1 (25-74)||(25378270-25378319)
chr1 (25-74)||(25378335-25378384)
chr1 (25-74)||(26660657-26660706)
chr1 (25-74)||(27549123-27549172)
chr1 (25-74)||(31909827-31909876)
chr1 (25-74)||(33324123-33324172)
chr1 (25-74)||(39181129-39181178)
chr1 (25-74)||(46518023-46518072)
chr1 (25-74)||(48605083-48605132)
[»] scaffold0111 (2 HSPs)
scaffold0111 (19-79)||(38389-38449)
scaffold0111 (19-74)||(38079-38134)
[»] scaffold0211 (1 HSPs)
scaffold0211 (77-111)||(15873-15907)
[»] scaffold0011 (1 HSPs)
scaffold0011 (25-74)||(257-306)


Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 712
Target Start/End: Complemental strand, 23599848 - 23599142
Alignment:
Q  18 catagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata-ttaaaaatggtccctataaatatccacaatttcatttttgatcc 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| ||||    
T  23599848 catagagcacatacatcattaattgaataaacctaaaagtcaaaatttgcttataattaaaaatggtccctataaatatccacaattctatttttaatcc 23599749  T
Q  117 ctnnnnnnntcacactttttagttaggtaaaaaatttcatcaac----------tcttataattttttatcagtatatgtgttaaaattatatcccgaag 206  Q
    ||       ||||||||||||||  ||||||| |||||||||||          |||| |||||||||||||| ||||||||||||||||||||||||||    
T  23599748 ctaaaaaaatcacactttttagtcgggtaaaatatttcatcaacatttttagtctcttgtaattttttatcagcatatgtgttaaaattatatcccgaag 23599649  T
Q  207 ctattttgcagtccttcctcaaatttcaagagctatttgaaggatactttttgaagagaatagcgttaattacgaaaagtataaaatcacacaaggaaaa 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||||||    
T  23599648 ctatttt-cagtccttcctcaaatttcaagagctatttgaaggatacttttttaagagaataccgttaattatgaagaatataaaatcacacaaggaaaa 23599550  T
Q  307 tatgtgtttttagttttacatagactatttttcaacttcgcacacattataaagagaggttatttgagatattaactctactataaatacgtgccaaaca 406  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  23599549 tctgtgtttttagttttacatagactatttttcaacttcgcacacattataaagagaggttatttgagatattaactctacaataaatacgtgccaagca 23599450  T
Q  407 aggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaaaaacaataatgcattatacacatgattaagctgatg--tataactcg 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  23599449 aggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaaaaacaataatgcattatacacatgattaagctgatgtatataactcg 23599350  T
Q  505 aagaaagtacaatatactcacagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataacatt 604  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23599349 aagaaagtacaatatactcagagaacgagctaatatataactcaaacaaagtacaagaaacaaacacacgcacaatgccgaactggcagtgtataacatt 23599250  T
Q  605 ggtaactttgctgatagaactaaacaaagtgcaaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcatacaaag 704  Q
     ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23599249 tgtaactttgctgataaaactaaacaaagtgcgaaagtgatgctgatgaacaaagtgtacgtgatgctatgttctgttaactccaagtatgcatacaatg 23599150  T
Q  705 tcttataa 712  Q
    ||||||||    
T  23599149 tcttataa 23599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 54787044 - 54786990
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  54787044 cacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 54786990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 21004012 - 21004072
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||    
T  21004012 atagaccacatacatcattaattgaatgaacctacaagtcaaaatttgcttataataaaaa 21004072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 22624473 - 22624524
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  22624473 atacatcattaattgaatgaacctaaaagtcaaaatttgcttataataaaaa 22624524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 40952600 - 40952552
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||||| || || ||||||||||||||||||||||    
T  40952600 acatacatcattaattgaatgaatctaaaagtcaaaatttgcttatatt 40952552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 54787054 - 54787114
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| || || || ||||||||||||||||||||||||    
T  54787054 atagaccacatacatcattgattgaatgaatctaaatgtcaaaatttgcttatattaaaaa 54787114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 51834598 - 51834539
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||| ||||||||||||||||||||| ||||| |||||| |||||| |||||| ||||||    
T  51834598 tagaccacatacatcattaattgaatgaaccttaaagtcgaaatttacttataataaaaa 51834539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 21003999 - 21003953
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||    
T  21003999 atacatcattaattgaatgaacttaaaagtcaaaatttgcttatatt 21003953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 39754160 - 39754112
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||||    
T  39754160 acatacatcattaattgaataaacctaaaaagtaaaatttgcttatatt 39754112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 40952618 - 40952666
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||| ||||||||||| ||| | ||||||||||||||||||||||    
T  40952618 acatacattattaattgaatgaacttaaaagtcaaaatttgcttatatt 40952666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 23599849 - 23599904
Alignment:
Q  17 tcatagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||||| ||||||||||||||||||||| ||  | ||| ||||||||||||||||    
T  23599849 tcatagaccacatacatcattaattgaatgaatttaaaaatcaaaatttgcttata 23599904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 25856082 - 25856137
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  25856082 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 25856137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 30279212 - 30279267
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  30279212 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 30279267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 51126173 - 51126118
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  51126173 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 51126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 51126177 - 51126232
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  51126177 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 51126232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 315701 - 315735
Alignment:
Q  77 aaatggtccctataaatatccacaatttcattttt 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  315701 aaatggtccctataaatatccaaaatttcattttt 315735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 6555883 - 6555917
Alignment:
Q  77 aaatggtccctataaatatccacaatttcattttt 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  6555883 aaatggtccctataaatatccagaatttcattttt 6555917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 20542865 - 20542807
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttat-attaaaaatgg 82  Q
    ||||||||||||||||||||| || || ||| ||||||||| ||||| |||||||||||    
T  20542865 cacatacatcattaattgaatgaatctaaaaatcaaaatttacttataattaaaaatgg 20542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 22624473 - 22624431
Alignment:
Q  37 taattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||    
T  22624473 taattgaatgaacctaaaagtcaaaatttgcttataataaaaa 22624431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 33659850 - 33659904
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||||||||| |||   ||||||| |||||||| ||||    
T  33659850 cacatacatcattaattgaataaacctaaaaaataaaatttacttatatttaaaa 33659904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 44639808 - 44639754
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  44639808 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 44639754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 51834609 - 51834663
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||| |||||||| || || |||| ||||||||||||||| ||||||    
T  51834609 cacatacatcatcaattgaatgaatctaaaagccaaaatttgcttataataaaaa 51834663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 12721707 - 12721658
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  12721707 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 12721658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 12721724 - 12721773
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  12721724 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 12721773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 13743936 - 13743985
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  13743936 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 13743985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 17659527 - 17659478
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  17659527 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 17659478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 20542875 - 20542928
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||| ||||||||||||||||||||| ||| | ||||| |||||||| |||||    
T  20542875 atagaccacatacatcattaattgaatgaacttaaaagttaaaatttgattata 20542928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 29978554 - 29978505
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  29978554 cacatacatcattaattgaatgaaccttaaaagtaaaatttgcttatatt 29978505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 41788983 - 41788934
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  41788983 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 41788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 48079578 - 48079529
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  48079578 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 48079529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 52256820 - 52256869
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||| ||||||||| |||   ||||||||||||||||    
T  52256820 cacatacatcattaattaaataaacctaaaaaataaaatttgcttatatt 52256869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 3590 - 3650
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  3590 atagaccacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 3650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3580 - 3526
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| || || |||||||||||||||||||||||||||    
T  3580 cacatacatcattgattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 3526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 3482 - 3422
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  3482 atagaccacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 3492 - 3546
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| || || |||||||||||||||||||||||||||    
T  3492 cacatacatcattgattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 3546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14053026 - 14052966
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  14053026 atagagcacatacatcattgattgaatgaacctaaaaatcaaaatttgcttatattaaaaa 14052966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 19293078 - 19293024
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  19293078 cacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 19293024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 33934147 - 33934087
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  33934147 atagaccacatacatcattgattgaatgaacctaaaaatcaaaatttgcttatattaaaaa 33934087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19293088 - 19293148
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| || || || ||||||||||||||||||||||||    
T  19293088 atagaccacatacatcattgattgaatgaatctaaatgtcaaaatttgcttatattaaaaa 19293148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 9303366 - 9303319
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  9303366 cacatgcatcattaattgaatgaacctaaaagtcaaaatttgcttata 9303319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 40962122 - 40962068
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  40962122 cacatacattattaattgaatgaacctaaaagtcaaaatttgtttatatttaaaa 40962068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 9578500 - 9578452
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatat 73  Q
    ||||||||||||||||||||||||||| |||   |||||||||||||||    
T  9578500 cacatacatcattaattgaataaacctaaaaagtaaaatttgcttatat 9578452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 14053036 - 14053090
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||  ||||||| || || |||||||||||||| ||||||||||||    
T  14053036 cacatacatcatcgattgaatgaatctaaaagtcaaaatttgtttatattaaaaa 14053090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 42631857 - 42631909
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||    
T  42631857 cacatacatcattaattgaatgaacct-aaagt-aaaatttgcttatatttaaaa 42631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 43484010 - 43484064
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  43484010 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 43484064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 32480274 - 32480323
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  32480274 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 32480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 37922874 - 37922825
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  37922874 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 37922825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 37922890 - 37922939
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  37922890 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 37922939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 38884008 - 38883959
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  38884008 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 38883959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 37396276 - 37396336
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  37396276 atagaccacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 37396336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 4637075 - 4637015
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||    
T  4637075 atagaccacatacattattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 4637015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 5580323 - 5580382
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||| ||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  5580323 tagaccacatacatcattaattgaatgaactttaaagtcaaaatttgcttataataaaaa 5580382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 37396263 - 37396212
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||||||| || || |||||||||||||||||||||||||||    
T  37396263 atacatcattaattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 37396212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 4637085 - 4637139
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| || || |||||||||||||| ||||||||||||    
T  4637085 cacatacatcattaattgaatgaatctaaaagtcaaaatttgtttatattaaaaa 4637139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9071266 - 9071218
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||||| || || ||||||||||||||||||||||    
T  9071266 acatacatcattaattgaatgaatctaaaagtcaaaatttgcttatatt 9071218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 40534510 - 40534450
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||| ||||    
T  40534510 atagatcacatacattattaattgaatgaacttaaaagtcaaaatttgcttatatttaaaa 40534450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 15178072 - 15178022
Alignment:
Q  29 tacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  15178072 tacatcattaattgaatgaacttaaaagtcaaaatttgcttataataaaaa 15178022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9071283 - 9071332
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||| ||||||||||| ||| | ||||||||||||||||||||||    
T  9071283 cacatacattattaattgaatgaacttaaaagtcaaaatttgcttatatt 9071332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 34911160 - 34911111
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||||    
T  34911160 cacatacatcattaattgaataaacctaaaaaataaaatttgcttatatt 34911111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 33150136 - 33150088
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||||    
T  33150136 acatacatcattaattgaataaacctaaaaagtaaaatttgcttatatt 33150088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 5580312 - 5580258
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| || || ||||  |||||||||||||| ||||||    
T  5580312 cacatacatcattaattgaatgaatctaaaagctaaaatttgcttataataaaaa 5580258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 9895264 - 9895314
Alignment:
Q  29 tacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||  | ||||||||||||| |||||| ||||||    
T  9895264 tacatcattaattgaataaatttaaaagtcaaaatttacttataataaaaa 9895314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 31964578 - 31964544
Alignment:
Q  77 aaatggtccctataaatatccacaatttcattttt 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  31964578 aaatggtccctataaatatccagaatttcattttt 31964544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 32070539 - 32070593
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  32070539 cacatacatcattaattgaatgaacctaaaatgtaaaatttgcttatatttaaaa 32070593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 38262063 - 38262117
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  38262063 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatttaaaa 38262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 2795388 - 2795437
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  2795388 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 2795437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 4898227 - 4898178
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  4898227 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 4898178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4898243 - 4898292
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| |||||||||   |||||||| |||||||    
T  4898243 cacatacatcattaattgaatgaacctcaaaagtaaaatttgtttatatt 4898292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 4945621 - 4945572
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  4945621 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 4945572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4945637 - 4945686
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| |||||||||   |||||||| |||||||    
T  4945637 cacatacatcattaattgaatgaacctcaaaagtaaaatttgtttatatt 4945686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9665191 - 9665240
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||  | |||||||||||||||    
T  9665191 cacatacatcattaattgaatgaacctaaaaaactaaatttgcttatatt 9665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 9709720 - 9709671
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  9709720 cacatacatcattaattgaattaacctaaaaagtaaaatttgcttatatt 9709671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 20195367 - 20195416
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  20195367 cacatacatcattaattgaatgaacctaaaaactaaaatttgcttatatt 20195416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 25668473 - 25668424
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||  ||||||||| |||||||    
T  25668473 cacatacatcattaattgaatgaacctaaaaagcaaaatttgtttatatt 25668424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 26567698 - 26567649
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  26567698 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 26567649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 34911176 - 34911225
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  34911176 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 34911225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 36490557 - 36490606
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  36490557 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 36490606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 37486077 - 37486126
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  37486077 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 37486126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 40340547 - 40340596
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  40340547 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 40340596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 40534667 - 40534716
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| || || ||||| ||||||| ||||||||    
T  40534667 cacatacatcattaattgaatgaatctaaaagttaaaatttacttatatt 40534716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 1043966 - 1043915
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1043966 atacatcattaattgaatgaacctgaaagtcaaaatttgcttatattaaaaa 1043915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 1043995 - 1044055
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||    
T  1043995 atagatcacatacatcattaattaaatgaacctaaaagttaaaatttgcttatattaaaaa 1044055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 22528920 - 22528860
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||    
T  22528920 atagaccacatacatcattgattgaatgaacctaaaagtctaaatttgcttatattaaaaa 22528860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 22995774 - 22995828
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||||||||| ||||    
T  22995774 cacatacatcattaattgaatgaacctaaaaagcaaaatttgcttatatttaaaa 22995828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 19679024 - 19678975
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  19679024 cacatacatcattaattgaatgaacctaaaaggtaaaatttgcttatatt 19678975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 24599957 - 24600006
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||||    
T  24599957 cacatacatcattaattgaataaacctaaaaagtaaaatttgcttatatt 24600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 54726123 - 54726063
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| |||||| || ||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  54726123 atagaccacatatattattaattgaatgaacctaaaaatcaaaatttgcttatatttaaaa 54726063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4181999 - 4181944
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctca-aagtcaaaatttgcttatat 73  Q
    ||||| |||||||||||||||||||||||| || | |||| |||||||||||||||    
T  4181999 atagaccacatacatcattaattgaataaatctaacaagttaaaatttgcttatat 4181944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 18480954 - 18481008
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||||||| |||||||| |||   |||||||||||||||| ||||    
T  18480954 cacatacatcattaattggataaacctaaaaagtaaaatttgcttatatttaaaa 18481008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 22528930 - 22528984
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| || || |||||  ||||||||||||||||||||    
T  22528930 cacatacatcattgattgaatgaatctaaaagttcaaatttgcttatattaaaaa 22528984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 32998549 - 32998595
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||||||||||||||| ||||| ||| | ||||||||||||||||    
T  32998549 atacatcattaattgaatgaacctaaaaattaaaatttgcttatatt 32998595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 34935600 - 34935546
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  34935600 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 34935546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 52638095 - 52638042
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  52638095 cacatacattattaattgaatgaacctaaaa-tcaaaatttgcttatatttaaaa 52638042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 52638111 - 52638157
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttat 71  Q
    ||||||||||||||||||||| || || ||||| |||||||||||||    
T  52638111 cacatacatcattaattgaatgaatctaaaagttaaaatttgcttat 52638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 54726133 - 54726187
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||| |||||||||| ||| || || |||||||||||||||||||||| ||||    
T  54726133 cacatatatcattaattaaatgaatctaaaagtcaaaatttgcttatatttaaaa 54726187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 26770799 - 26770848
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  26770799 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 26770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 44435236 - 44435187
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  44435236 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 44435187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 53717975 - 53718024
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  53717975 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 53718024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 31549855 - 31549801
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  31549855 cacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 31549801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 31549871 - 31549925
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  31549871 cacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 31549925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 39970219 - 39970165
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  39970219 cacatacatcattgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 39970165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 1741947 - 1741895
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1741947 tagatcacatacatcattaattgaatgaacctaaaagtcaaaatttgcttata 1741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 40211224 - 40211284
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| |||||||||| || ||||||| ||||| |||||||||||||||||||||||||||    
T  40211224 atagatcacatacatctttgattgaatgaacctaaaagtcaaaatttgcttatattaaaaa 40211284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3838181 - 3838127
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||    
T  3838181 cacatacatcattgattgaatgaacctaaaagttaaaatttgcttatattaaaaa 3838127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 40211214 - 40211160
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| || || |||||||||||||||||||||||||||    
T  40211214 cacatacatcattgattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 40211160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 47778491 - 47778437
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  47778491 cacatacattattaattgaatgaacctaaaagtcaaaatttgtttatatttaaaa 47778437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 32941856 - 32941909
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||| ||||||| || || ||||||||||||| |||||||||||||    
T  32941856 acatacatcattgattgaatgaatctaaaagtcaaaatttacttatattaaaaa 32941909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 8334361 - 8334314
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||||||||    
T  8334361 cacatacatcattaattgaatgaacctaaaagtctaaatctgcttata 8334314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 37066250 - 37066195
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  37066250 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 37066195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 20353119 - 20353065
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  20353119 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 20353065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 19532015 - 19531966
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  19532015 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 19531966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 27940807 - 27940758
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  27940807 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 27940758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 28003256 - 28003305
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  28003256 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 28003305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 35593719 - 35593768
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  35593719 cacatacatcattaattgaatgaacctaaaatataaaatttgcttatatt 35593768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 37066260 - 37066309
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  37066260 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 37066309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 46477195 - 46477146
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  46477195 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 46477146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 47778508 - 47778553
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttat 71  Q
    |||||||||||||||||||| ||  | |||||||||||||||||||    
T  47778508 acatacatcattaattgaatgaatttaaaagtcaaaatttgcttat 47778553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 30778078 - 30778132
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  30778078 cacatacatcattgtttgaataaacctaaaagtcaaaatttgcttatattaaaaa 30778132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 9005025 - 9005079
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||    
T  9005025 cacatacattattaattgaatgaacctaaaagtcaaaatttgcttatatttaaaa 9005079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 14642078 - 14642024
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||    
T  14642078 cacatacatcattaattgaataaacctaaaaatcaaaatttgctaatatttaaaa 14642024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 16985398 - 16985333
Alignment:
Q  14 tcatcatagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||| ||||| |||||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  16985398 tcattatagaccacatagatcattaattaaatgaacctaaaagtcaaaatttgcttataataaaaa 16985333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 12442832 - 12442774
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaa 78  Q
    |||| |||||| |||||||||| ||||||||| ||||||||||||| |||||| |||||    
T  12442832 tagatcacatatatcattaattaaataaacctaaaagtcaaaatttacttataataaaa 12442774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 17096521 - 17096575
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| ||||| |||||||| ||||||||||||    
T  17096521 cacatacatcattgattgaatgaacctaaaagttaaaatttgtttatattaaaaa 17096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 7581463 - 7581512
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||||| |||||||||||||||||||| ||| | ||||||||||||||||    
T  7581463 cacatatatcattaattgaataaacctaaaaattaaaatttgcttatatt 7581512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 39602982 - 39603031
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||||    
T  39602982 cacatacatcattaattgaataaacctaaaaagtaaaatttgcttatatt 39603031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 17096511 - 17096451
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| || |||||| ||| ||||||| || || |||||||||||||||||||||||||||    
T  17096511 atagatcaaatacattattgattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 17096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 22565676 - 22565728
Alignment:
Q  27 catacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||| ||||| | |||||||||||| ||||||| ||||    
T  22565676 catacatcattaattgaatgaacctaatagtcaaaatttgtttatatttaaaa 22565728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 22584304 - 22584364
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  22584304 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 22584364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29807146 - 29807086
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||||||| || || |||   |||||||||||||||||||||    
T  29807146 atagaccacatacatcattaattgaatgaatctaaaaagtaaaatttgcttatattaaaaa 29807086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 7164910 - 7164851
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||| ||| ||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  7164910 tagaccacgtacataattgattgaatgaacctaaaaatcaaaatttgcttatattaaaaa 7164851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 18942058 - 18942113
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  18942058 atagaccacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 18942113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 11773535 - 11773581
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    |||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  11773535 acatacattattaattgaatgaacttaaaagtcaaaatttgcttata 11773581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 14642089 - 14642143
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    |||| ||||||||| ||||||||||| || || ||| ||||||||||||||||||    
T  14642089 tagaccacatacattattaattgaatgaatctaaaattcaaaatttgcttatatt 14642143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 7336933 - 7336982
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  7336933 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 7336982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 15966034 - 15966083
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  15966034 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 15966083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 19784596 - 19784547
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  19784596 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 19784547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 19784601 - 19784650
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  19784601 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 19784650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 20207223 - 20207174
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||||  || ||||||||||||    
T  20207223 cacatacatcattaattgaatgaacctaaaagttcaattttgcttatatt 20207174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 26168266 - 26168315
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  26168266 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 26168315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 27304815 - 27304864
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| ||| | ||||||| ||||||||    
T  27304815 cacatacatcattaattgaatgaacctaaaaattaaaatttacttatatt 27304864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 33696733 - 33696782
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  33696733 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 33696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 35172502 - 35172555
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||| ||||||||| ||||||||||| | | | ||||||||||||||||||||    
T  35172502 atagaccacatacattattaattgaatgatcataaaagtcaaaatttgcttata 35172555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 35245653 - 35245604
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  35245653 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 35245604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 35245686 - 35245735
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  35245686 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 35245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 2033250 - 2033301
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  2033250 atacatcattaattgaatgaacttgaaagtcaaaatttgcttatattaaaaa 2033301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 256151 - 256215
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttat-attaaaaatgg 82  Q
    ||||| |||||||||||||||| |||| ||||| ||||| ||||||||||||| |||||||||||    
T  256151 atagatcacatacatcattaatggaatcaacctaaaagttaaaatttgcttataattaaaaatgg 256215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 2033231 - 2033181
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatta 75  Q
    |||| |||||||||||||||| ||||| ||||| |||||||||||||||||    
T  2033231 cacaaacatcattaattgaatgaacctaaaagttaaaatttgcttatatta 2033181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 1858355 - 1858409
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||||||| | |||   |||||||||||||||| ||||    
T  1858355 cacatacatcattaattgaataaacttaaaaagtaaaatttgcttatatttaaaa 1858409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 27082441 - 27082395
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    |||||||||||||||||||| ||  | ||||||||||||||||||||    
T  27082441 acatacatcattaattgaatgaatttaaaagtcaaaatttgcttata 27082395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7246945 - 7246897
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||||| || ||||||||||||    
T  7246945 cacatacatcattaattgaatgaacctaaaagtc-aattttgcttatatt 7246897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7418937 - 7418888
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  7418937 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 7418888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 10731551 - 10731600
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  10731551 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 10731600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 11989208 - 11989159
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  11989208 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 11989159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 11989220 - 11989269
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  11989220 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 11989269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 32786178 - 32786129
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  32786178 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 32786129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 32786194 - 32786243
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  32786194 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 32786243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 33169260 - 33169309
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||||||| | |||   ||||||||||||||||    
T  33169260 cacatacatcattaattgaataaacttaaaaagtaaaatttgcttatatt 33169309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 13219491 - 13219549
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaa 77  Q
    ||||| ||||||||||||| ||||||||||  | |||||||||||||||||||||||||    
T  13219491 atagaccacatacatcattgattgaataaatttaaaagtcaaaatttgcttatattaaa 13219549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 38190926 - 38190980
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||    
T  38190926 cacatacatcattgattgaatgaacctaaaattcaaaatttgcttatattaaaaa 38190980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 35050000 - 35049947
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttata 72  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  35050000 atagatcacatacatcattaattgaatgaacctaaaagtcaaaatttacttata 35049947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 43384551 - 43384492
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||    
T  43384551 atagaccacatacatcattaattgaatgaacct-gaagtcaaaatttgtttatattaaaaa 43384492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 12030312 - 12030363
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||| ||||||| ||||| |||||||||||||| ||||||||||||    
T  12030312 atacatcattgattgaatgaacctaaaagtcaaaatttgtttatattaaaaa 12030363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 38190907 - 38190856
Alignment:
Q  28 atacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||||||| ||||||| || || |||||||||||||||||||||||||||    
T  38190907 atacatcattgattgaatgaatctgaaagtcaaaatttgcttatattaaaaa 38190856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 49979951 - 49980010
Alignment:
Q  20 tagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||| ||||||||||||| ||||||| || || ||||||||||||||||||| |||||||    
T  49979951 tagaccacatacatcattgattgaatgaatctaaaagtcaaaatttgcttatgttaaaaa 49980010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 13219479 - 13219425
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||| | ||||| |||||||||||||||||||||    
T  13219479 cacatacatcattgattgaatgaacttaaaagttaaaatttgcttatattaaaaa 13219425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 46580888 - 46580834
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| ||||| ||||| ||||||| |||||||||||||    
T  46580888 cacatacatcattgattgaatgaacctaaaagtaaaaatttacttatattaaaaa 46580834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 40960811 - 40960871
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| || |||||| ||| ||||||| || || |||||||||||||||||||||||||||    
T  40960811 atagatcaaatacattattgattgaatgaatctaaaagtcaaaatttgcttatattaaaaa 40960871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 50144191 - 50144147
Alignment:
Q  35 attaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||| || || |||||||||||||||||||||||||||    
T  50144191 attaattgaatgaaactaaaagtcaaaatttgcttatattaaaaa 50144147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 31909817 - 31909762
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  31909817 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 31909762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 21909903 - 21909849
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||||||||| |||   ||||||| |||||||| ||||    
T  21909903 cacatacatcattaattgaataaacctaaaaagtaaaatttacttatattcaaaa 21909849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 37255188 - 37255134
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| || || |||   |||||||||||||||||||||    
T  37255188 cacatacatcattaattgaatgaatctaaaaagtaaaatttgcttatattaaaaa 37255134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 47011322 - 47011376
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||| ||||| |||   |||||||||||||||| ||||    
T  47011322 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaa 47011376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 49979944 - 49979890
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||| ||||||| || || ||||| ||||||| |||||||||||||    
T  49979944 cacatacatcattgattgaatgaatctaaaagttaaaatttacttatattaaaaa 49979890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 50144217 - 50144271
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    |||||| || ||||||| ||| ||||| ||||| |||||||||||||||||||||    
T  50144217 cacatatattattaattaaatgaacctaaaagttaaaatttgcttatattaaaaa 50144271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 5852750 - 5852701
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  5852750 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 5852701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 6763412 - 6763461
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  6763412 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 6763461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 8751494 - 8751445
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  8751494 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 8751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 8751510 - 8751559
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  8751510 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 8751559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 12993629 - 12993681
Alignment:
Q  25 cacatacatcattaattgaataaacct-caaagtcaaaatttgcttatattaaa 77  Q
    ||||||||||||||||||||| |||||  |||||| ||||||||||||||||||    
T  12993629 cacatacatcattaattgaatgaacctaaaaagtc-aaatttgcttatattaaa 12993681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 17988284 - 17988235
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  17988284 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 17988235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 21909920 - 21909973
Alignment:
Q  26 acatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||||||||||||||||||||| || |||   |||||||||||||||| ||||    
T  21909920 acatacatcattaattgaataaatctaaaaagtaaaatttgcttatatttaaaa 21909973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 25378319 - 25378270
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  25378319 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 25378270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 25378335 - 25378384
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  25378335 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 25378384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 26660706 - 26660657
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  26660706 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 26660657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 27549123 - 27549172
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  27549123 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 27549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 31909827 - 31909876
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  31909827 cacatacatcattaattgaatgaacctaaaaaataaaatttgcttatatt 31909876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 33324123 - 33324172
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||| ||||||||||||||||| |||   ||||||||||||||||    
T  33324123 cacatacattattaattgaataaacctaaaaagtaaaatttgcttatatt 33324172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 39181129 - 39181178
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  39181129 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 39181178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 46518023 - 46518072
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  46518023 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 46518072  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 48605132 - 48605083
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  48605132 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 48605083  T

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Target: scaffold0111 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38389 - 38449
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatattaaaaa 79  Q
    ||||| ||||||||||||||||||||| ||  | ||||| ||| |||||||||||||||||    
T  38389 atagatcacatacatcattaattgaatgaatttaaaagttaaattttgcttatattaaaaa 38449  T

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Target: scaffold0111; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 38079 - 38134
Alignment:
Q  19 atagagcacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||| ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  38079 atagaccacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 38134  T

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Target: scaffold0211 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 15907 - 15873
Alignment:
Q  77 aaatggtccctataaatatccacaatttcattttt 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  15907 aaatggtccctataaatatccagaatttcattttt 15873  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 257 - 306
Alignment:
Q  25 cacatacatcattaattgaataaacctcaaagtcaaaatttgcttatatt 74  Q
    ||||||||||||||||||||| ||||| |||   ||||||||||||||||    
T  257 cacatacatcattaattgaatgaacctaaaaagtaaaatttgcttatatt 306  T

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