View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_13 (Length: 467)
Name: NF3985_low_13
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 34569133 - 34569594
Alignment:
| Q |
1 |
ttatattctttaccttatcctcacaatcctctgcttaactggcattagtgtgccttttatctttctcacacactcaacattatggtcattgacttccaca |
100 |
Q |
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| T |
34569133 |
ttatattctttaccttatcctcacaatcctctgcttaactggcattagtgtgccttttatctttctcacacactcaacattatggtcattgacttccaca |
34569232 |
T |
|
| Q |
101 |
tatctatttttaggtacagttatatccataaagtatattttccacttaaagnnnnnnnnnnnnnngtttccttctaagattctcaatgctttggtatcat |
200 |
Q |
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| T |
34569233 |
tatctatttttaggtacagttatatccataaagtatattttccacttaaagttattattttttttgtttccttctaagattctcaatgctttggtatcat |
34569332 |
T |
|
| Q |
201 |
ggctgatttgattctcattcaaaacccactatagagttacttttagcatcattatagaaacgcaaatcctagtgaacctttgtacggaacaactaacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34569333 |
ggctgatttgattctcattcaaaacccactatagagctacttttggcatcattatagaaacgcaaatcctagtgaacctttgtacggaacaactaacttt |
34569432 |
T |
|
| Q |
301 |
ggacctttcttatggccacctaattggttaattcatctcaccttacatatacaatccaatgtaaggtctaaaatgctttggggggttagttaagttctta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34569433 |
ggacctttcttatggccacctaattggttaattcatctcaccttacatatacaatccaatgtaaggtctaaaatgttttggggggttagttaagttctta |
34569532 |
T |
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| Q |
401 |
tgaatcactaatattttaccaaatatgttatccttacaaggacaatgtttcttcatctcact |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34569533 |
tgaatcactaatattttaccaaatatgttatccttacaaggacaatgtttcttcatatcact |
34569594 |
T |
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