View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_16 (Length: 379)
Name: NF3985_low_16
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 34674820 - 34675181
Alignment:
| Q |
1 |
agtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatcactcgtacttgagagcatagattgttgtggcaagtgtgagg |
100 |
Q |
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| T |
34674820 |
agtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatcactcgtacttgagagtggagattgttgtggcaagtgtgagg |
34674919 |
T |
|
| Q |
101 |
tgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatgtccataaatctattatcttaaaatttcggatcaagatgtg |
200 |
Q |
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| T |
34674920 |
tgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatgtccataaatctattatcttaaaattttggatcaagatgtg |
34675019 |
T |
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| Q |
201 |
atgtccaactcgctgttctggttctcgattaaatataaatgatccctaacttccccctatggtccagcatttttgatatacttgttatatgccccaaaaa |
300 |
Q |
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| T |
34675020 |
atgtccaactcgctgttgtggttctcgattaaatataaatgatccctaacttccccctatggtccagcatttttgatatacttgttatatgccccaaaaa |
34675119 |
T |
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| Q |
301 |
tgtgaagtgttgtagtgagttggatacacgggaacaatggagtcaagaatcagagtgctttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675120 |
tgtgaagtgttgtagtgagttggatacacgggaacaatggagtcaagaatcagagtgctttc |
34675181 |
T |
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