View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_17 (Length: 342)
Name: NF3985_low_17
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_17 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 37562656 - 37562360
Alignment:
| Q |
21 |
atttgaatttgaatttgaatttggagagaagaaggtttgtgtgttgattgggtttgtggtggaagaagatagcatatataaaggaatggattttaggctt |
120 |
Q |
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| T |
37562656 |
atttgaatttgaatttgaatttggagagaagaaggtttgtgtgttgattgggtttgtggtggaagaagatagcatatataaaggaatggattttaggctt |
37562557 |
T |
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| Q |
121 |
tgctttggatttgaatttgtttgatttcagagcta-aaaagtgtggagggaaaattgggattttcaaagagacgtgccgtttggagggaactgaaaactt |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37562556 |
tgctttggatttgaatttgtttgatttcagagctaaaaaagcgtggagggaaaattgggattttcaaagagacgtgccgtttggagggaactgaaaattt |
37562457 |
T |
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| Q |
220 |
aatgtaaaagttgtacagaaacaaaatagtgaaataaccaattccggtggatctagatttcaattttgtatagagtgtcagtgtatgtgatcttgacacg |
319 |
Q |
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| T |
37562456 |
aatgtaaaagttgtacaaaaacaaaatagtgaaataaccaattccggtggatctagatttcaattttgtata------cagtgtatgtgatcttgacacg |
37562363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37562670 - 37562634
Alignment:
| Q |
1 |
ccaaggaagaagccatttgaatttgaatttgaatttg |
37 |
Q |
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| T |
37562670 |
ccaaggaagaagccatttgaatttgaatttgaatttg |
37562634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 15810 - 15838
Alignment:
| Q |
15 |
atttgaatttgaatttgaatttgaatttg |
43 |
Q |
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| T |
15810 |
atttgaatttgaatttgaatttgaatttg |
15838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 43380171 - 43380199
Alignment:
| Q |
15 |
atttgaatttgaatttgaatttgaatttg |
43 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43380171 |
atttgaatttgaatttgaatttgaatttg |
43380199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 43380177 - 43380205
Alignment:
| Q |
15 |
atttgaatttgaatttgaatttgaatttg |
43 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43380177 |
atttgaatttgaatttgaatttgaatttg |
43380205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 42950137 - 42950165
Alignment:
| Q |
15 |
atttgaatttgaatttgaatttgaatttg |
43 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42950137 |
atttgaatttgaatttgaatttgaatttg |
42950165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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