View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_18 (Length: 335)
Name: NF3985_low_18
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 11455984 - 11455830
Alignment:
| Q |
11 |
cataggcccgactggatcacctcgaaacaacctttccatttatttccaaacaagatcgatgattaacacacacctccgtttagcttcacttttaaatcgg |
110 |
Q |
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| T |
11455984 |
catagtcccgactggatcacctcgaaacaacctttccatttatttccaaacaagatcgatgattaacacatgccttcgtttagcttcacttttaaatcgg |
11455885 |
T |
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| Q |
111 |
gttcatattaatcaccctttcattttttaggcaaaaaataattcatagacaaaac |
165 |
Q |
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| T |
11455884 |
gttcatattaatcaccctttcattttttaggcaaaaaataattgatacacaaaac |
11455830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 11531699 - 11531854
Alignment:
| Q |
11 |
cataggcccgactggatcacctcgaaacaacctttccatttatttccaaacaagatcgatgattaacacacacctccgtttagcttcacttttaaatcgg |
110 |
Q |
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| T |
11531699 |
catagacccgactggatcacctcgaaacaacctttccatttatttccaaacaagatcgatgattaacacacgcctccgtttagcttcacttttaaatcgg |
11531798 |
T |
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| Q |
111 |
gttcatattaatcaccctttca-ttttttaggcaaaaaataattcatagacaaaac |
165 |
Q |
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| T |
11531799 |
gttcatattagtcaccctttcatttttttaggaaaaaaataattgatagacaaaac |
11531854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 11531840 - 11531988
Alignment:
| Q |
185 |
attgatagacaaaacttataaagtatnnnnnnnttataaccaaatatcgaccaagttcaaatgttgttcgttctattttttaaaaggattgttctatgtt |
284 |
Q |
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| T |
11531840 |
attgatagacaaaacttataaggtataaaaaaagtataaccaaatatcgaccaagttcaaatgttgttcgttctattttttaaaaggattgttcttcgtt |
11531939 |
T |
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| Q |
285 |
cttttgttaataaaatcttaataannnnnnnatttaaaatggtaaaatt |
333 |
Q |
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| T |
11531940 |
ctattgttaataaaatcttaataattattttatttaaaatggtaaaatt |
11531988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 11455812 - 11455723
Alignment:
| Q |
219 |
tataaccaaatatcgaccaagttcaaatgttgttcgttctattttttaaaaggattgttctatgttcttttgttaataaaatcttaataa |
308 |
Q |
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| T |
11455812 |
tataaccaaatatcgaccaagttcaaatgttgttcgttctattttttaaaaggattgttcttcgttctattgttaataaaatcttaataa |
11455723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 11494350 - 11494427
Alignment:
| Q |
227 |
aatatcgaccaagttcaaatgttgttcgttctat-tttttaaaaggattgttctatgttcttttgttaataaaatctt |
303 |
Q |
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| T |
11494350 |
aatatggaccgagttcaaatgatgttcgttctatatttttttaaggattgttgtttgttctattgttaataaaatctt |
11494427 |
T |
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