View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_2 (Length: 734)
Name: NF3985_low_2
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 81 - 716
Target Start/End: Original strand, 17917207 - 17917846
Alignment:
| Q |
81 |
caaaccagtacaagtaaagaagtagtataagttatcatatccacaacgattatggttttggactagaaaatcaaactaacttgcaagagattcattggag |
180 |
Q |
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| T |
17917207 |
caaaccag-acaagtaaagaagtagtataagttatcatatccacaacgattatcgttttcgattagaaaatcaaactaacttgcaagagattcattggag |
17917305 |
T |
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| Q |
181 |
attattttcatattatagaattcgattgaaaattcaaaaacatacttcggattttagaatccata-ggaggcaaaacagaaattaaagagggcacgcgag |
279 |
Q |
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| T |
17917306 |
attattttcatattatagaattcgattgaaaattcaaaaacatacttcggattttagaatccatatggaggcaaaacagaaattaaagagggcacgcgag |
17917405 |
T |
|
| Q |
280 |
aggggtggggcgagataagaatttcttgaggactaatgtcaacaatactcaagtcgataaaattaaagtcaacaagactcttaaggtaattgttagtaat |
379 |
Q |
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| T |
17917406 |
aggggtggggcgagataagaatttcttgaggactaatgtcaacaatactcaagtccataaaattaaagtcaacaagactcttaaggtaattgttagtaat |
17917505 |
T |
|
| Q |
380 |
tagttgttatattagtttttcttcattattcgaatttgaatagaagacttctaacgctttatcccattacttaaacca------atcgaaatacactatc |
473 |
Q |
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| T |
17917506 |
tagttgttatattagtttttcttctttgttcgaatttgaatagaagacttctaactctttatcccgttacttaaaccaaaatatatcgaaatacactatc |
17917605 |
T |
|
| Q |
474 |
agaaactttccttccagtaaaatgacacatcttagggagattgattaagaaatcatccaagaaagttcaatatgactcacattgaaattcttttggtcaa |
573 |
Q |
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| T |
17917606 |
agaaactttccttctagtaaaatgacacatcttagggagatggattaagaaatcatccaagaaagttcaatatgactcacattgaaattctattggtcaa |
17917705 |
T |
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| Q |
574 |
gaatctacgttcaaaactaacatgagcgaggtaaatccatcttgctcttttaagagagtaatttttaaaaatggatcctacacaaatgggttccaccgtc |
673 |
Q |
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| T |
17917706 |
gaatctacgttcaaaactaacatgagcgaggtaaatccatcttgctcttttaaaagagtaatttttaaaaatggatcctacacaagtggattccaccgtc |
17917805 |
T |
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| Q |
674 |
attaatcatttgtatattttttaaaacttatctgtgtctttat |
716 |
Q |
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| T |
17917806 |
attaattatttg--tattttttaaaacttatctgtgtctttat |
17917846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 16622602 - 16622651
Alignment:
| Q |
370 |
tgttagtaattagttgttatattagtttttcttcattattcgaatttgaa |
419 |
Q |
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| T |
16622602 |
tgttagtaattagttgttagattagtttttctcctttatccgagtttgaa |
16622651 |
T |
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