View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_20 (Length: 333)
Name: NF3985_low_20
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 49758441 - 49758726
Alignment:
| Q |
18 |
ctaaggcatggtacacgcaaactgaattgagtagacaaccattttctgctggccaaaatagagtatatgtttcaggagcctcaaagagagcgggatgatg |
117 |
Q |
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| T |
49758441 |
ctaaggcatggtacacgcaaactgaattgagtagacaacctttttctgctggcgaaaatagagtatatgtttcaggagcctcaaagagagcggtatgatg |
49758540 |
T |
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| Q |
118 |
gatcaattagaattctatccctttttcttaggccttcatcaattagtaagtcaaccaatttaacctggataccgcgag-tttnnnnnnnntaatcaacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
49758541 |
gatcaattagaattctatccctttttcttaggccttcatcaattagtaagtcaaccaatttaacctggataccgcgagttttaaaaaaaataatcaacca |
49758640 |
T |
|
| Q |
217 |
tttcatcttcatctaggacaatgggacgactccatattgaaggcataacttgtgccggcattcaaatgtcttctcatattttgaat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
49758641 |
attcatcttcatctaggacaatgggacgactccatattgaaggcataacttgtgccggcattcaaatgtcttttgatattttgaat |
49758726 |
T |
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