View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_23 (Length: 327)
Name: NF3985_low_23
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_23 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 38841640 - 38841334
Alignment:
| Q |
21 |
tgggtgccaacattccttcaacaacaatcgaagaactcgaatacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatct |
120 |
Q |
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| T |
38841640 |
tgggcgccaacattccttcaaaaacaatcgaagaactcgaacacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatct |
38841541 |
T |
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| Q |
121 |
atgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttcgatgagattctccttgacgccaccaagaga |
220 |
Q |
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| T |
38841540 |
atgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatctttgacgagattctccttgacgccaccaagaga |
38841441 |
T |
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| Q |
221 |
gatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttccagtagggcttcataagg |
320 |
Q |
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| T |
38841440 |
gatccgtccatggattcgctcaaagttacaatcgaaccggaagggaatacagtttcagtttataataatggtgaaggtgttccagtagggcttcataagg |
38841341 |
T |
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| Q |
321 |
aagagaa |
327 |
Q |
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| T |
38841340 |
aagagaa |
38841334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 9877695 - 9877549
Alignment:
| Q |
56 |
ctcgaatacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgtt |
155 |
Q |
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| T |
9877695 |
ctcgaacacattctcctccgtcccgatacctacgtcggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgtt |
9877596 |
T |
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| Q |
156 |
ctgtttcctacgttcctggactttacaaaatcttcgatgagattctc |
202 |
Q |
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| T |
9877595 |
caatctcctacgttcccggtctctacaagatcttcgacgagattctc |
9877549 |
T |
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