View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_low_27 (Length: 313)

Name: NF3985_low_27
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_low_27
NF3985_low_27
[»] chr4 (1 HSPs)
chr4 (10-300)||(23665761-23666052)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 23666052 - 23665761
Alignment:
Q  10 gcagagagataatatgaattgagaaatattattgaccataaagtagaaaaagttaagacttattttgaccgtagactctttttccctttgaaattcacac 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23666052 gcagagagagaatatgaattgagaaatattattgaccataaagtagaaacagttaagacttattttgaccgtagactctttttccctttaaaattcacac 23665953  T
Q  110 aagtgcgtaattaataattcgggtttgtattttgcataattctgttgaagaagttatagaacagtcacccactcaaagttttgtcgaatatagaaagaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23665952 aagtgcgtaattaataattcgggtttgtattttgcataattctgttgaagaagttatagaacagtcacccactcaaagttttgtcgaatatagaaagaat 23665853  T
Q  210 tgcatgattttgagtgggattttggcgtcttctttcaacctcaaataaatatcctac-aaatatacatgtcccatctaatgaatctaataat 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  23665852 tgcatgattttaagtgggattttggcgtcttctttcaacctcaaataaatatcttacaaaatatacatgtcccatctaatgaatctaataat 23665761  T

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