View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_28 (Length: 307)
Name: NF3985_low_28
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 8745948 - 8745828
Alignment:
| Q |
165 |
attagagacaacaaatatataaatctttatgaggcctatagcagagactctgcaatagaagaacatatttgactactatgcatattttatgagctaataa |
264 |
Q |
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| T |
8745948 |
attagagacaacaa-tatataaatctttatgaggcctatagcatagactctgcaatagaagaacatatttgactactatgcatattttatgagctaataa |
8745850 |
T |
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| Q |
265 |
actaatttttctttaggagcta |
286 |
Q |
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|||||||||| || |||||||| |
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| T |
8745849 |
actaattttttttaaggagcta |
8745828 |
T |
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Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 8748819 - 8748743
Alignment:
| Q |
92 |
tcaacagagattcaaaagattgaagtgattatcataaatattatctaaaaccctactttctccaatcctaaatatta |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8748819 |
tcaacagagattcaaaagattgaagtgattatcataaatattatctaaaaccctactttctccaatcctaaatatta |
8748743 |
T |
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