View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_29 (Length: 306)
Name: NF3985_low_29
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 33857282 - 33857515
Alignment:
| Q |
3 |
taatgaactgaggaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtccaccgataacat |
102 |
Q |
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| T |
33857282 |
taatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtccaccgataacat |
33857381 |
T |
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| Q |
103 |
ttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaa |
202 |
Q |
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| T |
33857382 |
ttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaa |
33857481 |
T |
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| Q |
203 |
ggttcttcctctgttgaagtttagttttgctcca |
236 |
Q |
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| T |
33857482 |
ggttcttcctctgttgaagtttagttttgctcca |
33857515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 33923641 - 33923408
Alignment:
| Q |
3 |
taatgaactgaggaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtccaccgataacat |
102 |
Q |
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| T |
33923641 |
taatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtccaccgataacat |
33923542 |
T |
|
| Q |
103 |
ttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaa |
202 |
Q |
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| T |
33923541 |
ttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaa |
33923442 |
T |
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| Q |
203 |
ggttcttcctctgttgaagtttagttttgctcca |
236 |
Q |
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| T |
33923441 |
ggttcttcctctgttgaagtttagttttgctcca |
33923408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 47872627 - 47872674
Alignment:
| Q |
2 |
gtaatgaactgaggaagtctatatctttggattattaaaataggggtt |
49 |
Q |
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| T |
47872627 |
gtaatgaactgatggagtctatatctttggagtattaaaataggggtt |
47872674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 49547372 - 49547324
Alignment:
| Q |
1 |
cgtaatgaactgaggaagtctatatctttggattattaaaataggggtt |
49 |
Q |
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| T |
49547372 |
cgtaatgaactaatgtagtttatatctttggagtattaaaataggggtt |
49547324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 487304 - 487266
Alignment:
| Q |
42 |
taggggttcatgcattttatgtccttgggaatctaatgt |
80 |
Q |
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| T |
487304 |
taggggttcatgcattttatgtccatgggaaactaatgt |
487266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 14961823 - 14961855
Alignment:
| Q |
51 |
atgcattttatgtccttgggaatctaatgtcca |
83 |
Q |
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| T |
14961823 |
atgcattttatgtccttgggaaactaatgtcca |
14961855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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