View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_3 (Length: 732)
Name: NF3985_low_3
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 6 - 566
Target Start/End: Original strand, 34097114 - 34097670
Alignment:
| Q |
6 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtatttatcatttcatagggtactacggttatcctagtgaaagttga |
105 |
Q |
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| T |
34097114 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtgtttatcgtttcatagggtactacggttatcctagtgaaagttga |
34097213 |
T |
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| Q |
106 |
aagcgggattcatggaactttatttgtgatttttcgcaaaatatttctatttcgtggtgcatcattagggattttaatgatatattggatgctcatgagg |
205 |
Q |
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| T |
34097214 |
aagcgggattcatggaactttatttgtgatttctcgcaaaatatttatatttcgtggtgcatcattagggattttaatgatatattggatgctcatgagg |
34097313 |
T |
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| Q |
206 |
aaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacaggcggtattagattatggggtgtagttatatgtccaaatggaaggaaggc |
305 |
Q |
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| T |
34097314 |
aaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacatgcgatattagattatgg---gttgttatatgtccaaatggaaggaaggc |
34097410 |
T |
|
| Q |
306 |
taccattttacctggtttcaaagtccaggcaac-cactccttgtgttttttagaagagattagagactatgctcttactagtgaaatgtggtttcaaatt |
404 |
Q |
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| T |
34097411 |
taccattttacctggtttcaaagtccaggcaacattctccttgtgttttttagaagagatt--agactatgctcttagtagtgaaatgtggtttcaaatt |
34097508 |
T |
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| Q |
405 |
ttttccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatgtttatcccattgtgaggccttgcagaactcgatgtacattcaaatt |
504 |
Q |
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| T |
34097509 |
tttcccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatatttatcccattgtgagaccttgcagaactcgatgtacattcaaatt |
34097608 |
T |
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| Q |
505 |
caaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta |
566 |
Q |
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| T |
34097609 |
caaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta |
34097670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 608 - 713
Target Start/End: Original strand, 34097670 - 34097772
Alignment:
| Q |
608 |
aaaaatttggtacagtggaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgctatcatcatgatcagggt |
707 |
Q |
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| T |
34097670 |
aaaaatttggtacaatggaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgct---atcatgatcagggt |
34097766 |
T |
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| Q |
708 |
gcaata |
713 |
Q |
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|||||| |
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| T |
34097767 |
gcaata |
34097772 |
T |
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