View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_35 (Length: 284)
Name: NF3985_low_35
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41298019 - 41298279
Alignment:
| Q |
1 |
cattctacagcttgtggtttacttcaaatacagaaaagcaagggttgtggaagagccaaaaattggggacttggaaaagggtagcatagagttagagaag |
100 |
Q |
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| T |
41298019 |
cattctacagcttgtggtttacttcaaatacagaaaagcaagggttgtggaagagcaaaaaattggggacttggaaaagggtagcatagagttagagaag |
41298118 |
T |
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| Q |
101 |
gtggtgaaagtggaaaagattgtcacaaattgtgaacaatgttgatgttgttgagggacaaaagtccaagggttttagagacttatattcagattccttc |
200 |
Q |
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| T |
41298119 |
gtggtgaaagtggaaaagattgtcacaaattgtgaacaatgttgatgttgttgagggacaaaagtccaagggttttagagacttatattcagattccttc |
41298218 |
T |
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| Q |
201 |
ttttatgtgtttttctgtatactgtaatgaaatctctcccactatgggtgttgtaatcaaa |
261 |
Q |
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| T |
41298219 |
ttttatgtgtttttctgtatactgtaatgaaatatcccccactatgggtgttgtaatcaaa |
41298279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 41307933 - 41308105
Alignment:
| Q |
8 |
cagcttgtggtttacttcaaatacagaaaagcaagggttgtggaagagccaaaaattggggacttggaaaagggtagcatagagttagagaaggtggtga |
107 |
Q |
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| T |
41307933 |
cagcttgtgatttacttcaaatacagaaaagagagggttatggaagaatcgaaaattggggatttggagaagggtagcatagagttagagaaggtggtga |
41308032 |
T |
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| Q |
108 |
aagtggaaaagattgtcacaaattgtgaacaatgttgatgttgttgagggacaaaagtccaagggttttagag |
180 |
Q |
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| T |
41308033 |
aagtggaaaagattgtcacaaattgtgaacaatgttgatgttattgagggataaaagttcaaggattttagag |
41308105 |
T |
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