View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_36 (Length: 282)
Name: NF3985_low_36
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 108 - 282
Target Start/End: Original strand, 12948280 - 12948443
Alignment:
| Q |
108 |
aactttgctttatagttcacaaaagtaaacttcccatcatgcttcatgcttcatgctcaatgcttatttatttcttttgctgatccatcaacctcatctt |
207 |
Q |
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| T |
12948280 |
aactttgctttgtagttcacaaaagtaaacttcccatcatgcttcatgct-------caatgcttat----ttcttttgctgatccatcaacctcatctt |
12948368 |
T |
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| Q |
208 |
acacatttgtttattactaaaatatttcaactttctcaaaccaagatatcaacactcatcttttgtttgtttgtt |
282 |
Q |
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| T |
12948369 |
acacatttgtttattactaaaatatttcaactttctcaaaccaagatatcaacactcatcttttgtttgtttgtt |
12948443 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 12958016 - 12958112
Alignment:
| Q |
43 |
aaaaatcatgttaaagccttaaccttaaaagataattgaagctgacaaatatatgctacaaaagtaactttgctttatagttcacaaaagtaaactt |
139 |
Q |
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| T |
12958016 |
aaaaaccatgttaaagccttcaccttaaaaaataattgattttgacaaatatatgctacaaaagtgactttgctttatcgttcacaaaagtaaactt |
12958112 |
T |
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