View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_low_41 (Length: 254)

Name: NF3985_low_41
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_low_41
NF3985_low_41
[»] chr1 (12 HSPs)
chr1 (1-237)||(12948525-12948772)
chr1 (144-237)||(12954259-12954352)
chr1 (53-237)||(12994489-12994686)
chr1 (160-237)||(12940517-12940594)
chr1 (15-118)||(12954091-12954193)
chr1 (160-237)||(12916793-12916870)
chr1 (29-118)||(12916934-12917023)
chr1 (29-117)||(12940364-12940452)
chr1 (173-237)||(12988334-12988398)
chr1 (53-96)||(12988202-12988245)
chr1 (175-229)||(12978182-12978236)
chr1 (175-229)||(19756225-19756279)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12948525 - 12948772
Alignment:
Q  1 cttatttcttaaatcatcactttctgaaatcatgttagttcaacatgttccagattttcataggataatcttgcaagataagaaacttgtaagcatgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12948525 cttatttcttaaatcatcactttctgaaatcatgttagttcaacatgttccagattttcataggataatcttgcaagataagaaacttgtaagcatgtta 12948624  T
Q  101 gaaataattattttgc-----------atttttcatttatgtatctttgtttataaaatgttaatatgtaatttctgaatttctttgttgcagagggttc 189  Q
    ||||||||||||||||           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12948625 gaaataattattttgcatatttacgttatttttcatttatgtatctttgtttataaaatgttaatgtgtaatttctgaatttctttgttgcagagggttc 12948724  T
Q  190 caaagatatatgtggacaaatattggaaaggaatatcaaaccctatat 237  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  12948725 caaagaaatatgtggacaaatatttgaaaggaatatcaaaccctatat 12948772  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 12954259 - 12954352
Alignment:
Q  144 aaaatgttaatatgtaatttctgaatttctttgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaaccctatat 237  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  12954259 aaaatgttaatgtatgatttctgaatttctttgttgcagagggttcctaagatatatgtggagaaatattggaaaggaatatcaaaccctatat 12954352  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 12994489 - 12994686
Alignment:
Q  53 gattttcataggataatcttgcaagataagaaacttgtaagcatgttagaaataattattttgcattttt-----------catttatgtatctttgttt 141  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||  |||||| |||           ||||||| ||| | |||||    
T  12994489 gattttcataggataatattgcaagataagaagcttgtaagcatattagaaataattaaattgcatatttagagtatgttgcatttatttatatatgttt 12994588  T
Q  142 ata-----aaatgttaatatgtaatttctgaatttctttgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaaccctata 236  Q
    |||     |||||||||||   | ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||    
T  12994589 atatttaaaaatgttaata---actttatgaatttctttgttgcagagggttccaaagaaatatgtggagaaatattggaaaggaatatcaaacccaata 12994685  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 12940517 - 12940594
Alignment:
Q  160 atttctgaatttctttgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaaccctatat 237  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  12940517 atttctgaatttctttgttgcagagggttccaaagaaatatgtggagaaatattggaaaggaatatcaaaccctatat 12940594  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 12954091 - 12954193
Alignment:
Q  15 catcactttctgaaatcatgttagttcaacatgttccagattttcataggataatcttgcaagataagaaacttgtaagcatgttagaaataattatttt 114  Q
    ||||| |||||||| |||||| | || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  12954091 catcagtttctgaa-tcatgtcatttgaacatgttccggattttcataggataatcttgcaagataagaaacttgtaagcatattagaaagaattatttt 12954189  T
Q  115 gcat 118  Q
    ||||    
T  12954190 gcat 12954193  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 12916870 - 12916793
Alignment:
Q  160 atttctgaatttctttgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaaccctatat 237  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  12916870 atttctgaatttctttgttgcagagagttccaaagaaatatgtggagaaatattggaaaggaatatcaaaccctatat 12916793  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 12917023 - 12916934
Alignment:
Q  29 atcatgttagttcaacatgttccagattttcataggataatcttgcaagataagaaacttgtaagcatgttagaaataattattttgcat 118  Q
    ||||||| | ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||  | ||| |||||||||| ||||||    
T  12917023 atcatgtcatttcaacaagttccagattttcatagaataatattgcaagataagaaacttgtaagtctattacaaataattatattgcat 12916934  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 12940364 - 12940452
Alignment:
Q  29 atcatgttagttcaacatgttccagattttcataggataatcttgcaagataagaaacttgtaagcatgttagaaataattattttgca 117  Q
    ||||||| | ||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||  | ||| |||||||||| |||||    
T  12940364 atcatgtcatttcaacaagttccagatttacatagaataatattgcaagataagaaacttgtaagtctattacaaataattatattgca 12940452  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 12988334 - 12988398
Alignment:
Q  173 tttgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaaccctatat 237  Q
    ||||||||||||| |||| ||||  |||||||| |||| ||||||| ||||||||||||| ||||    
T  12988334 tttgttgcagaggattcccaagaagtatgtggagaaattttggaaaagaatatcaaacccaatat 12988398  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 12988202 - 12988245
Alignment:
Q  53 gattttcataggataatcttgcaagataagaaacttgtaagcat 96  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||    
T  12988202 gattttcataggataatattgcatgataagaagcttgtaagcat 12988245  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 12978236 - 12978182
Alignment:
Q  175 tgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaa 229  Q
    |||||||||||||||| |||| || |||||| |||||||||||| ||||| ||||    
T  12978236 tgttgcagagggttcccaagaaatttgtggagaaatattggaaaagaataccaaa 12978182  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 19756225 - 19756279
Alignment:
Q  175 tgttgcagagggttccaaagatatatgtggacaaatattggaaaggaatatcaaa 229  Q
    |||||||||||||||| |||| || |||||| |||||||||||| ||||| ||||    
T  19756225 tgttgcagagggttcccaagaaatttgtggagaaatattggaaaagaataccaaa 19756279  T

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