View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_5 (Length: 659)
Name: NF3985_low_5
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Original strand, 46308750 - 46309204
Alignment:
| Q |
6 |
agcagcacagaaaattcgatggactacaacctcagcaggataacaatttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
105 |
Q |
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| T |
46308750 |
agcaccacagaaaattggatggactacaacctcagcaggataacaacttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
46308849 |
T |
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| Q |
106 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
205 |
Q |
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| T |
46308850 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
46308949 |
T |
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| Q |
206 |
tccataattatatataaccttaacaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
305 |
Q |
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| T |
46308950 |
tccataattatatataaccttaaaaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
46309049 |
T |
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| Q |
306 |
aagcacttgttcctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatgg |
405 |
Q |
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| T |
46309050 |
aagcacttgttcctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatgg |
46309149 |
T |
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| Q |
406 |
tgtaattaaatagcaacaccttatgtgtttatgttggaaatttttggcaagatat |
460 |
Q |
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| T |
46309150 |
tgtaattaaatagcaacaccttatgtgtttatgttggaaacttttggcaagatat |
46309204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 350 - 641
Target Start/End: Original strand, 46309203 - 46309498
Alignment:
| Q |
350 |
attattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatggtgtaattaaatagcaacacctt-atgtgtttatgttggaaattt |
448 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46309203 |
attattttactttttggatcgacgcttattttgtgaccgttgatatggttgtatggtgtaattaaatagcaacacctttatgtgtttatgttggaaattt |
46309302 |
T |
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| Q |
449 |
ttggcaagatatggcgttagtatttatggagtttatgtcctgtggtaattaaagtttct---tgttttgaaaatttgttccacaacctatttgacctatg |
545 |
Q |
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| T |
46309303 |
ttggcaagatatggctttagtatttatggagtttatgtcctgtggtaattaaagtttcttcttgttttgaaaatttgttccacaacctatttgacctatg |
46309402 |
T |
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| Q |
546 |
tagcatcaacactacacggtgaaggcgtattttgtgttatgagttgttgtttgatatctttagtataaattttaatctattgtgtttatgtgttat |
641 |
Q |
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| T |
46309403 |
tagcatcaacactacacggtgaaggcgtattttgtgtgatgagttgttgtttgatatctttagtataaattttaatctactgtgtttatgtgttat |
46309498 |
T |
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