View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_50 (Length: 214)
Name: NF3985_low_50
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 29042761 - 29042919
Alignment:
| Q |
20 |
attagcaactagtccaagtccaacaggtacacaatcttgttctttatcactgttacattcaccaacatttcttttcttttcaagttcttcatctttttgc |
119 |
Q |
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| T |
29042761 |
attagcaactagtccaagtccaacaggtacacaatcttgttctttatcactgttacattcaccaacatttcttttcttttcaagttcttcatctttttgc |
29042860 |
T |
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| Q |
120 |
aaagaaaactcatctaagtcggtgacaatagttgaagctccattgctatgaccattact |
178 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
29042861 |
aaagaaaactcatctaagtcggtgacaattgttgaagttccattgctatgaccattact |
29042919 |
T |
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