View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3985_low_6 (Length: 648)

Name: NF3985_low_6
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3985_low_6
NF3985_low_6
[»] chr1 (21 HSPs)
chr1 (84-230)||(14708570-14708716)
chr1 (83-230)||(14654308-14654455)
chr1 (83-230)||(14664099-14664246)
chr1 (82-230)||(14669676-14669824)
chr1 (82-230)||(14706080-14706228)
chr1 (82-225)||(14683747-14683890)
chr1 (82-230)||(14716283-14716431)
chr1 (105-225)||(14674478-14674598)
chr1 (105-225)||(14679856-14679976)
chr1 (105-225)||(14681596-14681716)
chr1 (105-225)||(38175520-38175640)
chr1 (105-222)||(14652525-14652642)
chr1 (105-222)||(14662316-14662433)
chr1 (76-230)||(28366159-28366314)
chr1 (127-225)||(14676629-14676727)
chr1 (104-230)||(33988062-33988188)
chr1 (105-226)||(14667101-14667222)
chr1 (151-216)||(37422175-37422240)
chr1 (123-219)||(11872489-11872585)
chr1 (151-225)||(28698550-28698624)
chr1 (109-169)||(14703133-14703193)
[»] chr2 (23 HSPs)
chr2 (25-226)||(30733984-30734185)
chr2 (82-230)||(30732000-30732148)
chr2 (105-225)||(32918077-32918197)
chr2 (106-223)||(2841008-2841125)
chr2 (84-225)||(43850046-43850187)
chr2 (155-230)||(8979314-8979389)
chr2 (155-230)||(9026778-9026853)
chr2 (151-230)||(9032045-9032124)
chr2 (155-225)||(8984690-8984760)
chr2 (155-225)||(9008018-9008088)
chr2 (155-232)||(9023437-9023514)
chr2 (155-230)||(8973304-8973379)
chr2 (25-220)||(19232310-19232504)
chr2 (104-222)||(9020847-9020966)
chr2 (104-230)||(9030390-9030516)
chr2 (151-215)||(10763914-10763978)
chr2 (155-230)||(8988447-8988522)
chr2 (155-230)||(8992140-8992215)
chr2 (153-220)||(6471747-6471813)
chr2 (167-230)||(9016485-9016548)
chr2 (151-218)||(35701893-35701960)
chr2 (98-191)||(17275862-17275955)
chr2 (184-219)||(39814115-39814150)
[»] chr6 (6 HSPs)
chr6 (25-222)||(30521242-30521439)
chr6 (105-230)||(10795880-10796005)
chr6 (105-230)||(10791642-10791767)
chr6 (151-220)||(8875691-8875760)
chr6 (105-183)||(11333269-11333347)
chr6 (106-169)||(13136607-13136670)
[»] chr4 (14 HSPs)
chr4 (105-230)||(11652382-11652507)
chr4 (105-230)||(50077189-50077314)
chr4 (82-230)||(49106496-49106644)
chr4 (84-225)||(49108602-49108743)
chr4 (47-221)||(26998673-26998846)
chr4 (44-221)||(26984597-26984773)
chr4 (105-222)||(3461132-3461249)
chr4 (70-221)||(48205832-48205983)
chr4 (25-147)||(1711974-1712095)
chr4 (105-194)||(21503706-21503795)
chr4 (123-220)||(41013554-41013651)
chr4 (488-556)||(43172396-43172464)
chr4 (162-215)||(6431957-6432010)
chr4 (180-217)||(34481154-34481191)
[»] chr8 (14 HSPs)
chr8 (84-220)||(37679757-37679893)
chr8 (25-229)||(40054305-40054509)
chr8 (25-226)||(10944309-10944510)
chr8 (73-222)||(37682057-37682206)
chr8 (105-230)||(41841142-41841267)
chr8 (105-225)||(44878980-44879100)
chr8 (105-225)||(44880821-44880941)
chr8 (151-232)||(42555119-42555200)
chr8 (151-205)||(44582870-44582924)
chr8 (482-557)||(36643373-36643448)
chr8 (151-230)||(42220882-42220960)
chr8 (181-225)||(42872516-42872560)
chr8 (151-230)||(42092013-42092091)
chr8 (25-63)||(36828000-36828038)
[»] chr5 (7 HSPs)
chr5 (104-222)||(7524968-7525086)
chr5 (80-230)||(1716418-1716567)
chr5 (105-231)||(3643631-3643757)
chr5 (103-218)||(4103249-4103364)
chr5 (25-189)||(5350672-5350835)
chr5 (149-215)||(19261150-19261216)
chr5 (154-220)||(16037861-16037926)
[»] chr7 (1 HSPs)
chr7 (102-216)||(8128149-8128262)
[»] scaffold0549 (1 HSPs)
scaffold0549 (22-171)||(5447-5596)
[»] chr3 (1 HSPs)
chr3 (174-220)||(15758562-15758608)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 14708716 - 14708570
Alignment:
Q  84 tagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatata 183  Q
    ||||||||||||  ||||| |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| |||    
T  14708716 tagcaagctactaaagtgacctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14708617  T
Q  184 ctacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14708616 ctacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 14654308 - 14654455
Alignment:
Q  83 gtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatat 182  Q
    |||||||||||||  ||||  |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| ||    
T  14654308 gtagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagat 14654407  T
Q  183 actacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14654408 actacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14654455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 14664099 - 14664246
Alignment:
Q  83 gtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatat 182  Q
    |||||||||||||  ||||  |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| ||    
T  14664099 gtagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagat 14664198  T
Q  183 actacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14664199 actacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 14669676 - 14669824
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    ||||||||||||||  |||   |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| |    
T  14669676 agtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacaga 14669775  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14669776 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14669824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 14706228 - 14706080
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    ||||||||||||||  |||   |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| |    
T  14706228 agtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacaga 14706129  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14706128 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14706080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 14683890 - 14683747
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    ||||||||||||||  |||   |||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| |    
T  14683890 agtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacaga 14683791  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14683790 tactacacttgatcttagccaaaaggccgagaaaggtatgagtt 14683747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 14716431 - 14716283
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    ||||||||||||||  |||   |||||||||||||||||  |||||||||||| |||||||||||||  |||||| | |||||||||||||||||||| |    
T  14716431 agtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacaga 14716332  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14716331 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 14716283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 14674598 - 14674478
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14674598 tctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14674499  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  14674498 aggccgagaaaggtatgagtt 14674478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 14679976 - 14679856
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14679976 tctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14679877  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  14679876 aggccgagaaaggtatgagtt 14679856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 14681716 - 14681596
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| |||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14681716 tctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14681617  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||| ||||    
T  14681616 aggccgagaaaggtataagtt 14681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 38175520 - 38175640
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| |||| ||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  38175520 tctccccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 38175619  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  38175620 aggccgagaaaggtatgagtt 38175640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 14652642 - 14652525
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| ||| |||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14652642 tctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14652543  T
Q  205 aggccgagaaaggtatga 222  Q
    ||||||||||||||||||    
T  14652542 aggccgagaaaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 14662433 - 14662316
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| ||| |||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  14662433 tctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14662334  T
Q  205 aggccgagaaaggtatga 222  Q
    ||||||||||||||||||    
T  14662333 aggccgagaaaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 28366159 - 28366314
Alignment:
Q  76 agaccaagtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaa-acatatcaaatattaaactgataa 174  Q
    ||||| |||||||||||||| || |   |||||||||| ||||||  |||||||||||| |||| |||||||    |||||||| |||||||||||||||    
T  28366159 agacctagtagcaagctactataatagtctctcccccttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataa 28366258  T
Q  175 gaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28366259 gaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 28366314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 14676727 - 14676629
Alignment:
Q  127 taatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    |||||||| |||||||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 14676629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 33988188 - 33988062
Alignment:
Q  104 ctctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaa 203  Q
    |||||||||| ||||||  |||||||||||| ||||  |||||    |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  33988188 ctctcccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 33988089  T
Q  204 aaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||| ||||    
T  33988088 aaggccgagaaaggtatgagttgaaag 33988062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 14667101 - 14667222
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    |||||||||  |||||  |||||||||||  |||||||||||||  || ||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  14667101 tctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaa 14667200  T
Q  205 aggccgagaaaggtatgagtta 226  Q
    ||||||||||||||||||||||    
T  14667201 aggccgagaaaggtatgagtta 14667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 37422240 - 37422175
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaag 216  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37422240 acatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 11872489 - 11872585
Alignment:
Q  123 aatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggta 219  Q
    |||||||||||| |||| ||||||    |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  11872489 aatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 28698624 - 28698550
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||||||||| |||||| || |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  28698624 acatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagtt 28698550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 14703193 - 14703133
Alignment:
Q  109 cccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaact 169  Q
    ||||| ||||| | |||||||||||| ||| || ||||||  |||||||||||||||||||    
T  14703193 cccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaact 14703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 30734185 - 30733984
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    |||||||||||||||| | ||||||||||||| |||   || || |||||||  || ||||||||||||||  | ||   ||||||||| ||||||  ||    
T  30734185 gtggggtgcgccaagccaatgcaatagtgcaacgcactggcgacactcgagaagcctagtagcaagctactaaaatggcttctccccctaaaaaaagtaa 30734086  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagt 224  Q
    |||||||||  |||||||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  30734085 tttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagt 30733986  T
Q  225 ta 226  Q
    ||    
T  30733985 ta 30733984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 30732148 - 30732000
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    |||||||||||||   ||||  ||| |||||||||||||  |||||||||||| |||||||||||||  |||||| | |||||||||||||||||||| |    
T  30732148 agtagcaagctaccaaagtggcctccccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacaga 30732049  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30732048 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 30732000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 32918197 - 32918077
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| ||| |||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  32918197 tctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 32918098  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  32918097 aggccgagaaaggtatgagtt 32918077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 2841008 - 2841125
Alignment:
Q  106 ctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaa 205  Q
    |||||||||||||||  |||||||||||| |||| ||||||    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  2841008 ctccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 2841107  T
Q  206 ggccgagaaaggtatgag 223  Q
    ||||||||||||||||||    
T  2841108 ggccgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 43850187 - 43850046
Alignment:
Q  84 tagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatata 183  Q
    |||||||||| |  ||||| |||||||||||||||||   ||||||||||  ||||  ||||||   |||||||| |||||||||||||||||||| |||    
T  43850187 tagcaagctattgaagtgacctctccccctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagata 43850088  T
Q  184 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43850087 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 43850046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 8979389 - 8979314
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 8979314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 9026853 - 9026778
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9026853 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 9026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 9032124 - 9032045
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9032124 acatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaag 9032045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 8984760 - 8984690
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 8984690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 9008088 - 9008018
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9008088 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 9023514 - 9023437
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagtt 232  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9023514 atcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagtt 9023437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 8973379 - 8973304
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8973379 atcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 8973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 19232310 - 19232504
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    ||||||||||||||||   ||||||||||||| ||| |||  || || ||||  || | |||||||||| |  ||||   |||||||||||||||   ||    
T  19232310 gtggggtgcgccaagcttatgcaatagtgcaacgcataagtgacacttgagaagcccaatagcaagctattgaagtggcttctccccctcaaaaaggtaa 19232409  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||||| | |||| ||| |||   ||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  19232410 tttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 9020966 - 9020847
Alignment:
Q  104 ctctccccctcaaaaaataaatttaatatcg-agtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagcca 202  Q
    ||||| |||||||||||  |||||||||  | ||||| |||||||   |||| ||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  9020966 ctctcaccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagcca 9020867  T
Q  203 aaaggccgagaaaggtatga 222  Q
    ||||||||||||| ||||||    
T  9020866 aaaggccgagaaatgtatga 9020847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 9030516 - 9030390
Alignment:
Q  104 ctctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaa 203  Q
    |||||||||||||||||  |||||||||  | |||| ||||||    || | |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  9030516 ctctccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaa 9030417  T
Q  204 aaggccgagaaaggtatgagttaaaag 230  Q
    |||||| |||||  |||||||| ||||    
T  9030416 aaggccaagaaaaatatgagttgaaag 9030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 10763914 - 10763978
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaa 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  10763914 acatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 8988522 - 8988447
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||| ||||    
T  8988522 atcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggccaagaatggtataagttgaaag 8988447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 8992215 - 8992140
Alignment:
Q  155 atcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  8992215 atcagatattgaactcataagaacatatactacacttgatcttagccaaaagactgagaaaggcatgagttaaaag 8992140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 6471747 - 6471813
Alignment:
Q  153 atatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  6471747 atatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaaaggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 9016548 - 9016485
Alignment:
Q  167 actgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||  |||||||||||||||||    
T  9016548 actgataagaacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaag 9016485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 35701960 - 35701893
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggt 218  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||||||||||| |  |||||||||    
T  35701960 acatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaagttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 17275955 - 17275862
Alignment:
Q  98 agtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacactt 191  Q
    ||||| ||||||||||||||||   |||| ||||||| |||| |||||||   |||||| ||| ||| ||||||||||||| ||||||||||||    
T  17275955 agtgatctctccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  184 ctacacttgatcttagccaaaaggccgagaaaggta 219  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 30521439 - 30521242
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    ||||||||||||| || | ||||||||||||| |||||  | || || |||||||| | ||||||||||   ||||| ||||||||||||||||||||||    
T  30521439 gtggggtgcgccaggccaatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctatagtagtggactctccccctcaaaaaataaa 30521340  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatga 222  Q
    || ||||||| ||||  |  ||||  |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||    
T  30521339 ttgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 10795880 - 10796005
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| |||| |||||||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  10795880 tctccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 10795979  T
Q  205 aggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||| ||||    
T  10795980 aggccgagaaaggtatgagttgaaag 10796005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 10791642 - 10791767
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||| |||||||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  10791642 tctccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 10791741  T
Q  205 aggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||| ||||    
T  10791742 aggccgagaaaggtatgagttgaaag 10791767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 8875760 - 8875691
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||| ||||    
T  8875760 acatatcagatattaaattgataagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 11333347 - 11333269
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatata 183  Q
    ||||||||||||||||  |||||||||||| |||| || ||||   |||||||| ||||||||||||||||||||||||    
T  11333347 tctccccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaacatata 11333269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 13136670 - 13136607
Alignment:
Q  106 ctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaact 169  Q
    ||||| |||||||||  |||||||||||| ||| |||||||||  |||||||| ||||||||||    
T  13136670 ctccctctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaact 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 11652382 - 11652507
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||| |||| |||||||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  11652382 tctccccctcaaaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 11652481  T
Q  205 aggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||||||||    
T  11652482 aggccgagaaaggtatgagttaaaag 11652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 50077189 - 50077314
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  50077189 tctccccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 50077288  T
Q  205 aggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||| ||||    
T  50077289 aggccgagaaaggtatgagttgaaag 50077314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 49106496 - 49106644
Alignment:
Q  82 agtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacata 181  Q
    ||||||||||||||   ||||  ||||||||||||||||  |||||||||||| |||| |||||||   |||||||| |||||||||||||||||||| |    
T  49106496 agtagcaagctactaaggtgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacaga 49106595  T
Q  182 tactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49106596 tactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 49106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 49108602 - 49108743
Alignment:
Q  84 tagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatata 183  Q
    |||||||||||| |  |||  ||||||||||||||||  |||||||||||| |||| ||||||    |||||||| |||||||||||||||||||| |||    
T  49108602 tagcaagctactgtgatgacttctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagata 49108701  T
Q  184 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49108702 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 49108743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 26998673 - 26998846
Alignment:
Q  47 aatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtga-actctccccctcaaaaaataaatttaatatcgagtgaaccatt 145  Q
    |||||||||| ||||| || || || ||||| ||||| |||||||||||  ||  | |||||| |||| ||||||  |||||||||||| ||| ||||||    
T  26998673 aatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctact--aggcagactctctccctaaaaaaagtaatttaatatcgtgtggaccatt 26998770  T
Q  146 ggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatg 221  Q
    |||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26998771 ggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 26984597 - 26984773
Alignment:
Q  44 tgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtga-actctccccctcaaaaaataaatttaatatcgagtgaacc 142  Q
    ||||||||||||| ||||| || || || ||||| ||||| |||||||||||  ||  | |||||| ||||  |||||  |||||||||||| ||| |||    
T  26984597 tgcaatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctact--aggcagactctctccctttaaaaagtaatttaatatcgtgtggacc 26984694  T
Q  143 attggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatg 221  Q
    ||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26984695 attggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 3461132 - 3461249
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||| ||||||  |||||||||||| |||| ||||||    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3461132 tctcccccttaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 3461231  T
Q  205 aggccgagaaaggtatga 222  Q
    ||||||||||||||||||    
T  3461232 aggccgagaaaggtatga 3461249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 48205983 - 48205832
Alignment:
Q  70 ctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaact 169  Q
    |||||||| ||||| ||||||||||||||||| || ||  |||||||||||  |||||||||||  || ||||| ||||  |||||| | |||||||| |    
T  48205983 ctcgagagtccaagcagcaagctactttagtgtacactttccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaatt 48205884  T
Q  170 gataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatg 221  Q
     ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  48205883 aataagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 1712095 - 1711974
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    |||||||| ||||||||||||| ||||||||| |||||||| |||| | |||| || | || |||||| || | ||  |||||||||||||| |||||||    
T  1712095 gtggggtgtgccaagcaattgctatagtgcaacgcaaaagc-acgcgcaagaggcccaataacaagcttctgtggtagactctccccctcaagaaataaa 1711997  T
Q  125 tttaatatcgagtgaaccattgg 147  Q
    |||||||||||||  ||||||||    
T  1711996 tttaatatcgagtagaccattgg 1711974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 21503795 - 21503706
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgat 194  Q
    ||||||||||||||||  |||||||||||| |||| | ||||    |||||||| |||||||||||||||||||| ||||||||||||||    
T  21503795 tctccccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 41013554 - 41013651
Alignment:
Q  123 aatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    ||||||||| |  ||||||| |||||  |||||||| ||||||||| |||||||||||||| || |||| |||||| |||||||||||||||| ||||    
T  41013554 aatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaagtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 43172464 - 43172396
Alignment:
Q  488 ctttcgtcaaaaccattcccatttgtggttaaagcttcatctgaggttggttcagaagcatccaaagaa 556  Q
    |||| |||||||||||||| |||||||| ||||||||||| ||||||| | ||| ||||||||||||||    
T  43172464 cttttgtcaaaaccattcctatttgtggataaagcttcatgtgaggtttggtcaaaagcatccaaagaa 43172396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  162 attaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaa 215  Q
    |||||||| ||||||| | |||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 34481154 - 34481191
Alignment:
Q  180 tatactacacttgatcttagccaaaaggccgagaaagg 217  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  34481154 tatactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 37679893 - 37679757
Alignment:
Q  84 tagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatata 183  Q
    |||||||||||  | |||  ||||||||||||| |||||||||||||||| |||| ||||||||   |||||||| |||||||||||||||||||| |||    
T  37679893 tagcaagctaccgtggtggcctctccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagata 37679794  T
Q  184 ctacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  37679793 ctacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 40054509 - 40054305
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    ||||||||||||||||   |||||||||||||  || |||| || ||  |||  || | |||||||||| |  ||||  |||||||||||||||||  ||    
T  40054509 gtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctccccctcaaaaaagtaa 40054410  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagt 224  Q
    ||||||||||  ||| |||||||   |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  40054409 tttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaat 40054310  T
Q  225 taaaa 229  Q
    |||||    
T  40054309 taaaa 40054305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 10944309 - 10944510
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    |||||||||||||| | | ||| ||||||||| |||| ||  || ||| |||  || ||||||||||||||  | ||   ||||||| ||||||||  ||    
T  10944309 gtggggtgcgccaaaccaatgctatagtgcaacgcaatagtgacactcaagaagcctagtagcaagctactaaaatggcttctccccatcaaaaaagtaa 10944408  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagt 224  Q
    |||||||||| |||||||||| ||  |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  10944409 tttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagt 10944508  T
Q  225 ta 226  Q
    ||    
T  10944509 ta 10944510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 37682206 - 37682057
Alignment:
Q  73 gagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgat 172  Q
    |||||||| | |||||||||| ||| ||| ||||||  ||| |||||| ||||||||||||| ||| ||||||||   |||||||| |||||||||||||    
T  37682206 gagagacctaatagcaagctattttggtggactctcatcctaaaaaaacaaatttaatatcgtgtggaccattggcccacatatcagatattaaactgat 37682107  T
Q  173 aagaacatatactacacttgatcttagccaaaaggccgagaaaggtatga 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  37682106 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 41841142 - 41841267
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||| ||||||||  |||||||||||| |||| |||||||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  41841142 tctccccatcaaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 41841241  T
Q  205 aggccgagaaaggtatgagttaaaag 230  Q
    ||||||||||||||||||||| ||||    
T  41841242 aggccgagaaaggtatgagttgaaag 41841267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 44879100 - 44878980
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||| ||||||    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  44879100 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44879001  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  44879000 aggccgagaaaggtatgagtt 44878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 44880821 - 44880941
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||||||||||  |||||||||||  |||| ||||||    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  44880821 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44880920  T
Q  205 aggccgagaaaggtatgagtt 225  Q
    |||||||||||||||||||||    
T  44880921 aggccgagaaaggtatgagtt 44880941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 42555119 - 42555200
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagtt 232  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||||||||||  | ||||||||||||||| ||||||    
T  42555119 acatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaagtt 42555200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 44582924 - 44582870
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaa 205  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  44582924 acatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 482 - 557
Target Start/End: Original strand, 36643373 - 36643448
Alignment:
Q  482 aacacactttcgtcaaaaccattcccatttgtggttaaagcttcatctgaggttggttcagaagcatccaaagaag 557  Q
    ||||| |||| ||||||||||||||  | ||||||||||||||||||||| || |||||||| |||||||||||||    
T  36643373 aacacccttttgtcaaaaccattcctttatgtggttaaagcttcatctgaagtgggttcagatgcatccaaagaag 36643448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 42220882 - 42220960
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||| |||||||||| ||||||| | |||||||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  42220882 acatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaag 42220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 42872516 - 42872560
Alignment:
Q  181 atactacacttgatcttagccaaaaggccgagaaaggtatgagtt 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  42872516 atactacacttaatcttagccaaaaggccgagaaaggtatgagtt 42872560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 42092091 - 42092013
Alignment:
Q  151 acatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    |||||||| |||||||||||||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||| ||||    
T  42092091 acatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaag 42092013  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 36828038 - 36828000
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaa 63  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  36828038 gtggggtgtgccaagcaattgcaatagtgcaatgcaaaa 36828000  T

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Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 7525086 - 7524968
Alignment:
Q  104 ctctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaa 203  Q
    |||||||||||||||||  |||||||||||| |||| |||||||   |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  7525086 ctctccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 7524987  T
Q  204 aaggccgagaaaggtatga 222  Q
    |||||||||||||||||||    
T  7524986 aaggccgagaaaggtatga 7524968  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 1716418 - 1716567
Alignment:
Q  80 caagtagcaagctactttagtgaactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaa-acatatcaaatattaaactgataagaac 178  Q
    ||||||||||||||||   ||||  ||||||||| ||||||  |||||||||||| |||| ||||| | |  |||||||| |||||||||||||||||||    
T  1716418 caagtagcaagctactc--gtgacttctcccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaac 1716515  T
Q  179 atatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 230  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716516 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaag 1716567  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 3643757 - 3643631
Alignment:
Q  105 tctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaa 204  Q
    ||||||||| ||||||  |||||||||||| |||| ||| |||   |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3643757 tctcccccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 3643658  T
Q  205 aggccgagaaaggtatgagttaaaagt 231  Q
    |||||||||||||||||| || |||||    
T  3643657 aggccgagaaaggtatgaatttaaagt 3643631  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 4103364 - 4103249
Alignment:
Q  103 actctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagcca 202  Q
    |||||| |||| ||||||  |||||||||||| ||| || |||||   |||||||| |||||||||||||||||||| |||||||||||||||||| |||    
T  4103364 actctctccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaacca 4103265  T
Q  203 aaaggccgagaaaggt 218  Q
    ||| || |||||||||    
T  4103264 aaatgctgagaaaggt 4103249  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 5350835 - 5350672
Alignment:
Q  25 gtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaataaa 124  Q
    ||||||||| |||  ||||||| ||||| ||| |||||| | ||||  |||||| | | |||||||||||||| ||| ||||| |||||||| |||||||    
T  5350835 gtggggtgcaccagacaattgctatagtacaacgcaaaa-cgacgcgggagagatccaatagcaagctactttggtggactctacccctcaagaaataaa 5350737  T
Q  125 tttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacac 189  Q
    |||||||||| ||| |||||||    |||||||| ||||||||||||||| || | |||||||||    
T  5350736 tttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagatactacac 5350672  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 19261150 - 19261216
Alignment:
Q  149 aaacatatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaa 215  Q
    |||||||||| ||||| ||| |||||||||||||| ||||||||||||||  |||||||| ||||||    
T  19261150 aaacatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 16037926 - 16037861
Alignment:
Q  154 tatcaaatattaaactgataagaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||||||||||  | ||||||||| |||||||||||||||||||  ||| |||||||||| ||||    
T  16037926 tatcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgagaaaagtat 16037861  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 8128262 - 8128149
Alignment:
Q  102 aactctccccctcaaaaaataaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactgataagaacatatactacacttgatcttagcc 201  Q
    ||||||||||||||| ||||||||||||||| | |||| |||||||   |||||||| |||||||||| | ||||||||||||||||||| |||||| ||    
T  8128262 aactctccccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaacc 8128164  T
Q  202 aaaaggccgagaaag 216  Q
    |||||  ||||||||    
T  8128163 aaaagaacgagaaag 8128149  T

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Target: scaffold0549 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 5596 - 5447
Alignment:
Q  22 ttagtggggtgcgccaagcaattgcaatagtgcaatgcaaaagctacgctcgagagaccaagtagcaagctactttagtgaactctccccctcaaaaaat 121  Q
    ||||||||| |||| | | || ||||| ||||||  ||||| || || || |||||||| | |||||||||| | | ||| ||||||| |||||||||||    
T  5596 ttagtggggcgcgcgaggtaaatgcaacagtgcatcgcaaaggcgacacttgagagacccaatagcaagctattgtggtggactctccacctcaaaaaat 5497  T
Q  122 aaatttaatatcgagtgaaccattggtaaacatatcaaatattaaactga 171  Q
    ||||||||||||| |||||| |||||   | |||||| ||||||||||||    
T  5496 aaatttaatatcgtgtgaacaattggcccatatatcagatattaaactga 5447  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  174 agaacatatactacacttgatcttagccaaaaggccgagaaaggtat 220  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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