View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3985_low_7 (Length: 497)
Name: NF3985_low_7
Description: NF3985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3985_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Original strand, 7810621 - 7811089
Alignment:
| Q |
16 |
ataggtatgcataatacgttaaccgtaatatagtaatctagcttatgacttaatttaattagttcattaagatatatagttacttgcgaaacaagtaaag |
115 |
Q |
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| T |
7810621 |
ataggtatgcataatacgttaaccgtcatatagtaatctagcttatgacttaatttaattagttcattaagatatatagttacttgcgaaacaagtaaag |
7810720 |
T |
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| Q |
116 |
taactagttaaactccatagt----------------tgtattttgttgtattgtggacaatatttaaaggcattatatggttaataagatgagtgaaat |
199 |
Q |
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| T |
7810721 |
taactagttaaactccatagttgtattttgttgtagttgtattttgttgtattgtggacaatatttaaaggcattatatggttaataagatgagtgaaat |
7810820 |
T |
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| Q |
200 |
caagtttgattttaacaattggtattagagtctggttgaggattcaacctagagaaccaaaataacttatataagttttcagtttgcaagtttgttacac |
299 |
Q |
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| T |
7810821 |
caagtttgattttaacaattggtattagagtctggttgaggattcaacctagagaaccaaaataacttatataagttttcagtttgcaagtttgttacac |
7810920 |
T |
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| Q |
300 |
atgcaatctcaaagattgttctttctcaatctttttcatgaaacaatggaggaatcatgcaactttatgcaacttgcagttccattatttgatggcttct |
399 |
Q |
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| T |
7810921 |
atgcaatctcaaagattgttctttctcaatctttttcatgaaacaatggaggaatc----------atgcaacttgcagttccattatttgatggcttct |
7811010 |
T |
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| Q |
400 |
atgatcatttggaaaagttactggagatcttgcttcactacaaggaatatttgagtttgattgagaaaggtgttgtcaa |
478 |
Q |
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| T |
7811011 |
atgatcatttggaaaagttactggagatcttgcttcactacaaggaatatttgagtttgattgagaaaggtgttgtcaa |
7811089 |
T |
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