View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3986_high_2 (Length: 519)
Name: NF3986_high_2
Description: NF3986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3986_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 16330313 - 16329893
Alignment:
| Q |
13 |
gagaggaagaacaacagtaacagaaaggtgtg-tagtttgtgcatgcttctaagcgaaattgattacgactaaattgatttcaactaaaagtgagttgaa |
111 |
Q |
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| T |
16330313 |
gagaggacgaacaatactaactgaaaggtgtggtagtttgtgcttgcctctaagcaaaattgattccgtctaaattgatttcaactaaaattgagttgaa |
16330214 |
T |
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| Q |
112 |
tgatacatgatttatgtttagatacacttgagtaaaaataagttgaactacagatttaaggctaaaaaccttgtttggagataaaaactctaaatttcaa |
211 |
Q |
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| T |
16330213 |
cgttacatgatttatgtt--gatacacttgagtaaaaataagttgaactacaaatttaaggctaaaaaccttgtttggaggcaaaaactctaaatttcaa |
16330116 |
T |
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| Q |
212 |
cttcaagttaaacttcattctatgagacaaaagcaattctactcatagacacagaaacagtacaaaagtgtaattaaacatgaacgtaatctgatagatt |
311 |
Q |
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| T |
16330115 |
cttcaagttaaacttcattctatgagacaaaagcaactctactcataaacacagaaacagcaaaaaagtgtaattaaacatgaatgtaatctcatagatt |
16330016 |
T |
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| Q |
312 |
ctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctacttgccagaaatctttgacagccaaacctgcataattatagtacattaattt |
411 |
Q |
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| T |
16330015 |
ctttaccaatcgtgggatcagcaacaaagacaacagtactgtcatctacttgtcagaaatctttgacagccaaacctgcataataatagtacatt-attc |
16329917 |
T |
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| Q |
412 |
caagtttcatttcactaattaata |
435 |
Q |
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| T |
16329916 |
caagtttaatttcattaattaata |
16329893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 16329582 - 16329506
Alignment:
| Q |
426 |
ctaattaataacctccaactcagcccttaaattgtgcgaatatcgtgatcataaacctggagtatcaggatagttctg |
503 |
Q |
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| T |
16329582 |
ctaattaataacctc-aactcaaccattaaattgggcgaatatcgtgatcataaacctggagtatcaggatagttctg |
16329506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 43152376 - 43152426
Alignment:
| Q |
86 |
ttgatttcaactaaaagtgagttgaatgatacatgatttatgtttagatac |
136 |
Q |
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| T |
43152376 |
ttgatttcaattaaaagtgagttgaatgaaaagtgatttatgtttggatac |
43152426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 503
Target Start/End: Original strand, 27961986 - 27962483
Alignment:
| Q |
14 |
agaggaagaacaacagtaacagaaaggtgtg-tagtttgtgcatgcttctaagcgaaa-ttgattacgactaaattgatttcaactaaaagtgagttgaa |
111 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||| |||||||||||||||||||||||||| ||||||||||| || |
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| T |
27961986 |
agaggaagaacaacaggaacagaaaggtgtggtagtttgtgggtacttctaagtgaaaattgattacgactaaattgatttcaaccaaaagtgagttaaa |
27962085 |
T |
|
| Q |
112 |
tgatacatgatttatgtttagatacacttgagtaaaaataagttgaactacagatttaaggctaaaaaccttgtttggagataaaaactctaaatttcaa |
211 |
Q |
| |
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|| || ||||||||||||| |||||| | | ||||||| |||||||||| | |||||||||||| |||| ||||||| ||||||| |||||||||| |
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| T |
27962086 |
tgttagatgatttatgtttggatacattcgtataaaaattagttgaactataaatttaaggctaagaaccacatttggaggtaaaaacaataaatttcaa |
27962185 |
T |
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| Q |
212 |
cttcaagttaaacttcattctatgagacaaaagcaattctac-------tcatagacacagaaacagtacaaaagtgtaattaaacatgaacgtaatctg |
304 |
Q |
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| T |
27962186 |
cttcaagttaaacttcattcta-gagacaaaaccaactttacaatttactcataaacacaaaaacaacccaaaagtgtaatcgaacatgaacgtagtctc |
27962284 |
T |
|
| Q |
305 |
atagattctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctacttgccagaaatctttgacagccaaacctgcataattatagtaca |
404 |
Q |
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| T |
27962285 |
gtagattctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctacttgccagaaatctttgacagccaaacctgcataataataggaca |
27962384 |
T |
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| Q |
405 |
-ttaatttcaagtttcatttcactaattaataacctccaactcagcccttaaattgtgcgaatatcgtgatcataaacctggagtatcaggatagttctg |
503 |
Q |
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| T |
27962385 |
tttaatttcaagtttcatttcattaattaataacct-aaactcaacccttaaactgtgcaaagaccgtgatcataaacctggagtatcgggatagttctg |
27962483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 25208770 - 25208718
Alignment:
| Q |
83 |
aaattgatttcaactaaaagtgagttgaatgatacatgatttatgtttagata |
135 |
Q |
| |
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|||||||||| || ||||||||||||||||| | ||||||||||||| |||| |
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| T |
25208770 |
aaattgattttaattaaaagtgagttgaatgtaaaatgatttatgtttcgata |
25208718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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