View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3986_low_1 (Length: 619)
Name: NF3986_low_1
Description: NF3986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3986_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 14850862 - 14851270
Alignment:
| Q |
16 |
tcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14850862 |
tcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctctttggaagctttgagtgcgaattcatgag |
14850961 |
T |
|
| Q |
116 |
agaatccgaatttgtcgatgaggtaggatacggtgaatgggtttgaagtggaggtgaggaatttgagtgaaaataggaagggtgcgttgtagagtgttgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14850962 |
agaatccgaatttgtcgatgaggtaggatacggtgaatgggtttgaagtggtggtgaggaatttgagtgaaaataggaagggtgcgttgtagagtgttgt |
14851061 |
T |
|
| Q |
216 |
tgttgttgatatgcgaaatgcattgttgcagagaaaagctttcaacattgaatcttgtagaggttagaagcaaatgtaaggttttgttgtggaaagagga |
315 |
Q |
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| T |
14851062 |
tgttgttgatatgcgaaatgcattgttgcagagaaaagctttcgacattgaatcttgtagaggttagaagcaaatgtaaggttttgttgtggaaagagga |
14851161 |
T |
|
| Q |
316 |
agaagatgattctattcaactgcgttgtggtcgctcgccgtgggagcgtaattaagtaaagttagcacctctgtctgaaccatccgatcaagatcacggt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14851162 |
agaagatgattctattcaactgcgttgtggtcgctcgccgtgggagcgtaattaattaaagttagcacc----tctgaaccatccgatcaagatcacggt |
14851257 |
T |
|
| Q |
416 |
tcagatgataaga |
428 |
Q |
| |
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||||||||||||| |
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| T |
14851258 |
tcagatgataaga |
14851270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 14552135 - 14551993
Alignment:
| Q |
20 |
tgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgagagaa |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14552135 |
tgaaaccgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgtgagaa |
14552036 |
T |
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| Q |
120 |
tccgaatttgtcgatgaggtaggatacggtgaatgggtttgaa |
162 |
Q |
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||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
14552035 |
tccaaatttgtggatgaggtaggatacggtgaatgagtttgaa |
14551993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 457 - 610
Target Start/End: Original strand, 14851299 - 14851451
Alignment:
| Q |
457 |
aaggttgaaatctgaaccattcaatcttgatcaaacggcttcaatgcaaaacctaatttagatgagataaatgaaagtcatttttaagtccttnnnnnnn |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14851299 |
aaggttgaaatctgaaccattcaatcttgatcaaacggcttcaatgcaaaacctaatttagatgagataaatgaaagtca-ttttaagtccttaaaaaaa |
14851397 |
T |
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| Q |
557 |
caataaagtacactatatccttactttctttaagctttgtttgattgatgatgt |
610 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
14851398 |
caagaaagtacactatgtccttactttctttaagctttgttagattgatgatgt |
14851451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 15023553 - 15023410
Alignment:
| Q |
28 |
tgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgagagaatccgaatt |
127 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||||| |
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| T |
15023553 |
tgatttttgaagaagtagagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgcaaatccatgtgagaaaccgaatt |
15023454 |
T |
|
| Q |
128 |
tgtcgatgaggtaggatacggtgaatgggtttgaagtggaggtg |
171 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
15023453 |
tgtcaatgaggtaggatacgatgaatgggtttgaagtggtggtg |
15023410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 14575130 - 14575000
Alignment:
| Q |
16 |
tcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgag |
115 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | | |
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| T |
14575130 |
tcattgaaaccgtgatttttgaagaagttgataactgaatcaggtttttgtgatgttttgaaataaagctgtttggaagctttgagtgcggattcaggtg |
14575031 |
T |
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| Q |
116 |
agaatccgaatttgtcgatgaggtaggatac |
146 |
Q |
| |
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||| |||||||||| ||||||||||||||| |
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| T |
14575030 |
tgaaaccgaatttgtggatgaggtaggatac |
14575000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 14567178 - 14567040
Alignment:
| Q |
16 |
tcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgag |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| | |
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| T |
14567178 |
tcattgaaaccataatttttgaagaagttaagaactgaatcaggttttagtgaggttttgaaataaagcggtttggaagctttgagtgcaaattcatgtg |
14567079 |
T |
|
| Q |
116 |
agaatccgaatttgtcgatgaggtaggatacggtgaatg |
154 |
Q |
| |
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|||| || || |||| |||||||||||| || ||||||| |
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| T |
14567078 |
agaacccaaacttgtggatgaggtaggaaacagtgaatg |
14567040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 14513258 - 14513177
Alignment:
| Q |
85 |
tgtttggaagctttgagtgcgaattcatgagagaatccgaatttgtcgatgaggtaggatacggtgaatgggtttgaagtgg |
166 |
Q |
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||||||||||||||||||||||||| | | |||||||| |||||||||||||| || || || ||||||| || |||||||| |
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| T |
14513258 |
tgtttggaagctttgagtgcgaatttaggcgagaatccaaatttgtcgatgagataagacacagtgaatgagtgtgaagtgg |
14513177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 14521198 - 14521141
Alignment:
| Q |
72 |
tttgaaataaagctgtttggaagctttgagtgcgaattcatgagagaatccgaatttg |
129 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||| | | ||||||||||||||| |
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| T |
14521198 |
tttgaaacaaagttgtttggaagctttgagtgcgaatttaggcgagaatccgaatttg |
14521141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 38525195 - 38525329
Alignment:
| Q |
20 |
tgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaattcatgagagaa |
119 |
Q |
| |
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||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| || ||| |||||||||| ||| |||||||| ||||| |
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| T |
38525195 |
tgaaaccgtgattcttgaagaagttgataactgaatcgggtttttgtgaggttttgaaacgaaagggttctgaagctttgattgcaaattcatgtgagaa |
38525294 |
T |
|
| Q |
120 |
tccgaatttgtcgatgaggtaggatacggtgaatg |
154 |
Q |
| |
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| |||||||| |||||||||||| || ||||||| |
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|
| T |
38525295 |
actgaatttgtggatgaggtaggaaacagtgaatg |
38525329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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