View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3987_high_1 (Length: 675)

Name: NF3987_high_1
Description: NF3987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3987_high_1
NF3987_high_1
[»] chr7 (9 HSPs)
chr7 (14-660)||(33902207-33902862)
chr7 (22-130)||(24211326-24211434)
chr7 (22-160)||(46603696-46603832)
chr7 (22-115)||(9603484-9603577)
chr7 (22-115)||(9831055-9831148)
chr7 (33-115)||(4040862-4040948)
chr7 (59-119)||(45996484-45996544)
chr7 (86-130)||(3399435-3399479)
chr7 (29-101)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (22-160)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (22-160)||(25267030-25267168)
chr8 (22-132)||(2233868-2233978)
chr8 (22-130)||(32162764-32162870)
chr8 (22-129)||(39907939-39908046)
chr8 (68-129)||(17072689-17072750)
chr8 (68-129)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (22-159)||(41242179-41242316)
chr3 (22-119)||(16041133-16041230)
chr3 (22-119)||(16053073-16053170)
chr3 (22-160)||(11076939-11077076)
chr3 (22-119)||(16037577-16037674)
chr3 (30-130)||(17517888-17517988)
chr3 (33-159)||(37820798-37820924)
chr3 (22-119)||(39933347-39933443)
chr3 (25-124)||(9821003-9821102)
chr3 (22-130)||(28389387-28389501)
chr3 (22-165)||(31229723-31229866)
chr3 (22-126)||(5050593-5050697)
chr3 (93-130)||(34730789-34730826)
chr3 (42-130)||(50744732-50744820)
chr3 (93-130)||(34870135-34870172)
chr3 (21-77)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (22-130)||(12185707-12185815)
chr6 (22-129)||(9456209-9456316)
chr6 (22-130)||(3441218-3441326)
chr6 (22-130)||(10068183-10068289)
chr6 (38-130)||(25070402-25070494)
chr6 (21-70)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (22-129)||(3067606-3067713)
chr4 (22-129)||(5050426-5050533)
chr4 (30-118)||(4059118-4059206)
chr4 (56-128)||(31040283-31040356)
chr4 (39-130)||(43967986-43968077)
chr4 (22-124)||(18371146-18371248)
chr4 (56-126)||(36622116-36622186)
chr4 (22-130)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (22-130)||(25808484-25808592)
chr1 (22-158)||(46298512-46298648)
chr1 (22-130)||(31501054-31501162)
chr1 (47-129)||(19339915-19339997)
chr1 (23-130)||(49423341-49423448)
chr1 (22-130)||(23392714-23392823)
chr1 (22-101)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (22-125)||(2126184-2126287)
chr2 (40-129)||(11152190-11152279)
chr2 (65-127)||(22348730-22348792)
chr2 (56-127)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (22-128)||(35075847-35075954)
chr5 (34-119)||(31559096-31559181)
chr5 (77-130)||(5150835-5150888)
chr5 (23-130)||(10020725-10020829)
chr5 (22-83)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (47-129)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (22-130)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 494; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 14 - 660
Target Start/End: Original strand, 33902207 - 33902862
Alignment:
Q  14 aatatccgaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatattttt 113  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||| |    
T  33902207 aatattcgaaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaatatttct 33902306  T
Q  114 atctttaatttcttaacctttgctttcaggacataagttagcatttctcattgtattcttatatggtgtgttgaaataaatccaagtagaatcaactttt 213  Q
    ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  33902307 atctttaattttttaacttttgccttcagggcataagttagcatttctcattggattcttgtatggtgtgttgaaataaatgcaagtagaatcaactttt 33902406  T
Q  214 tgatgttcattcaataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataat 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902407 tgatgttcattcgataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataat 33902506  T
Q  314 gctaacgattgatatttgactcaaaaccatcgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaattcccac 413  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33902507 gctaacgattgatatttgactcaaaaccattgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaatt-ccac 33902605  T
Q  414 acagtctcacacatttcaattcttcattatccatt-----------ttctttttctctaacttttcaatgtacaccatggtccacatttctcacattcat 502  Q
    || ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  33902606 actgtctcacacatttcaattcttcattatccattttctttttcaattctttttctctaacttttcaatgcacaccatggtccacatttctcacgttcat 33902705  T
Q  503 gacgggacatctattatcnnnnnnngaatgacgctaaggactgaacatctagaacgtgatcaaaagcggatgagataacaacgatcttgattgtttttat 602  Q
    ||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  33902706 gacgggacatctattatc-ttttttgaatgacgctaaggactgaacatctggaacgtgatcaaaagtggatcagataacaacgatcttgattgtttttat 33902804  T
Q  603 tatatttcatataacaaagtgatacaattgggatgcaattacaatggcagagaaaaat 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902805 tatatttcatataacaaagtgatacaattgggatgcaattacaatggcagagaaaaat 33902862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 24211326 - 24211434
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| ||||||||||||||||||||| |||| ||||| | ||||  |||||||  |||||||||| || ||||||||||||||||||| ||||||| |    
T  24211326 aaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaatattgaatacacaatttccaacaaaatatttctatctttga 24211425  T
Q  122 tttcttaac 130  Q
    |||||||||    
T  24211426 tttcttaac 24211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 46603832 - 46603696
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||||||||||||  |||||||  ||||||| ||||||| ||||||||||||||||| ||  |||||| ||||||||| ||||  ||| ||||||||     
T  46603832 aaaaatggaattaaaatataaatt--gtcttgaaaagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaaagtttctatctttag 46603735  T
Q  122 tttcttaacctttgctttcaggacataagttagcatttc 160  Q
    ||||||||| ||||| || ||| || |||||||||||||    
T  46603734 tttcttaacttttgccttaagggcacaagttagcatttc 46603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 9603577 - 9603484
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 115  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9603577 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 9831148 - 9831055
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 115  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9831148 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 4040948 - 4040862
Alignment:
Q  33 taaatcataaattatgtcttgataagataaaattttaaatttctaaaat----attgaatgcataatttccaacaaaatatttttat 115  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||| |||    |||||||||| ||||||||||||||| |||||||    
T  4040948 taaatcataaattttgtcttgaaaagataatattttaaaattctagaatattgattgaatgcacaatttccaacaaaatgtttttat 4040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 45996544 - 45996484
Alignment:
Q  59 ataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    |||||||||||||||| || |||||| ||| || ||||| ||| |||||||||||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaatatttttatcttt 45996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 3399435 - 3399479
Alignment:
Q  86 aatgcataatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  3399435 aatgcaaaatttccaacaaaaaacttttatatttaatttcttaac 3399479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 30003873 - 30003801
Alignment:
Q  29 gaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaa 101  Q
    |||||||| |||||||| ||| |||| || ||||  |||||| ||| ||| ||||||||| ||||||||||||    
T  30003873 gaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaa 30003801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 13498 - 13360
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||      
T  13498 aaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgc 13399  T
Q  122 tttcttaacctttgctttcaggacataagttagcatttc 160  Q
    ||||||||| | ||| || || ||| |||||| ||||||    
T  13398 tttcttaacttgtgccttgagaacacaagttaacatttc 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 25267030 - 25267168
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||      
T  25267030 aaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatgtttctatctttgg 25267129  T
Q  122 tttcttaacctttgctttcaggacataagttagcatttc 160  Q
    ||||||||| | |||||| ||| || |||||| ||||||    
T  25267130 tttcttaacttatgctttgagggcagaagttaacatttc 25267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 2233868 - 2233978
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||      
T  2233868 aaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaatacttttatctttgg 2233967  T
Q  122 tttcttaacct 132  Q
    ||| |||||||    
T  2233968 ttttttaacct 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 32162870 - 32162764
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||||||||||||||||||||| | | |||| || |||| |||||| ||||||||||||||| || || || ||| |||||||| ||||||| ||| |    
T  32162870 aaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatattg-atacacaa-ttcgaacaaaatgtttttatttttga 32162773  T
Q  122 tttcttaac 130  Q
    |||||||||    
T  32162772 tttcttaac 32162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 39908046 - 39907939
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| ||||||| |||||||| | | || | ||||||| ||||||||||||||||||||  |||||||||| | | | ||||||||| ||||||||     
T  39908046 aaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgcataatattctataaaatatttatatctttag 39907947  T
Q  122 tttcttaa 129  Q
    ||| ||||    
T  39907946 ttttttaa 39907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 17072750 - 17072689
Alignment:
Q  68 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17072750 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 17575521 - 17575582
Alignment:
Q  68 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17575521 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17575582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 41242179 - 41242316
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||      
T  41242179 aaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttccaacaaaatgtttttatctttgg 41242278  T
Q  122 tttcttaacctttgctttcaggacataagttagcattt 159  Q
    ||||||||| | ||| || ||| ||||||||| |||||    
T  41242279 tttcttaacttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 16041230 - 16041133
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16041230 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 16053170 - 16053073
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16053170 aaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 11076939 - 11077076
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||| |    
T  11076939 aaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaac-aaatgtttctatctttga 11077037  T
Q  122 tttcttaacctttgctttcaggacataagttagcatttc 160  Q
    ||||||||| | ||| || | |||| |||||||||||||    
T  11077038 tttcttaacttgtgccttaacgacacaagttagcatttc 11077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 16037674 - 16037577
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16037674 aaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 17517888 - 17517988
Alignment:
Q  30 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  17517888 aattaaatcataaattatatcttgaaaagataagaatttaaatttttagaatattgaatgcacaatttctaacaaaatatttctatctttgatttcttaa 17517987  T
Q  130 c 130  Q
    |    
T  17517988 c 17517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 37820798 - 37820924
Alignment:
Q  33 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 132  Q
    |||| |||||||  |||||| | ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| ||| ||||| |    
T  37820798 taaaacataaatattgtcttaaaaagataagattttaaatttctaaaacatggaatgcataatttccaataaaatatttttatatttagtttattaactt 37820897  T
Q  133 ttgctttcaggacataagttagcattt 159  Q
     || ||| ||| ||||||||| |||||    
T  37820898 gtgttttaagggcataagttaacattt 37820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 39933443 - 39933347
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||||||    
T  39933443 aaaaatagaattaaatcataaattgtgttttgaaaagataaaattt-aaatttttagaatattgaatgcacaattttcaacaaaaattttttatcttt 39933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 9821003 - 9821102
Alignment:
Q  25 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 124  Q
    ||||||||| ||| ||||||||||| |||| ||||||| |||| ||||||  | ||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9821003 aatggaattgaattataaattatgttttgaaaagataagatttaaaattttcagaatcttgaatgcacaatttctaacaaaatatttctatctttaattt 9821102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 28389501 - 28389387
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaattt------ctaaaatattgaatgcataatttccaacaaaatatttttat 115  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||||||||      ||| || ||| |||| | |||||||||||||||||||||||    
T  28389501 aaaaatagaattaaatcataaattatatcttgaaaagataatattttaaatttataggactagaacattaaatgtacaatttccaacaaaatatttttat 28389402  T
Q  116 ctttaatttcttaac 130  Q
    ||||  |||||||||    
T  28389401 ctttggtttcttaac 28389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 31229723 - 31229866
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| ||| |||| |||||||||| |||||| |  |||| ||||||||||||||||| || ||||| | ||||||||| ||||| ||| ||| | |||    
T  31229723 aaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatgtttctatatgtaa 31229822  T
Q  122 tttcttaacctttgctttcaggacataagttagcatttctcatt 165  Q
    | ||||||| | |||||| ||| || || ||| |||||| ||||    
T  31229823 tctcttaacttatgctttaagggcacaaattaacatttcccatt 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 5050593 - 5050697
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||||||||||||   ||| || ||| |||| |||| |||||||||||||| ||| |||||||||||| |||||  || ||||||||| ||| |||||    
T  5050593 aaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaatatttctatgtttaa 5050692  T
Q  122 tttct 126  Q
     ||||    
T  5050693 cttct 5050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 34730789 - 34730826
Alignment:
Q  93 aatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaac 34730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 50744732 - 50744820
Alignment:
Q  42 aattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||| ||||| || ||| ||| ||||||||||| ||||||||  |||||| |||||  || ||||||||| |||||||| |||||||||    
T  50744732 aattttgtctagagaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaatatttatatctttagtttcttaac 50744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 34870135 - 34870172
Alignment:
Q  93 aatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34870135 aatttccaacaaaatatttttatctttggtttcttaac 34870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 6276809 - 6276753
Alignment:
Q  21 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttcta 77  Q
    |||||||  |||||||| |||||||||||||||| || |||| |||| |||||||||    
T  6276809 gaaaaatataattaaattataaattatgtcttgaaaatataagatttaaaatttcta 6276753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 12185707 - 12185815
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||| ||||     
T  12185707 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaatattgaatgcacaattttcaacaaaatatttctatttttag 12185806  T
Q  122 tttcttaac 130  Q
    |||||||||    
T  12185807 tttcttaac 12185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 9456209 - 9456316
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||||||||||||| |||||||||||||||| || |||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |    
T  9456209 aaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagactattgaatgcacaatttccaacaaaatatttctatctttga 9456308  T
Q  122 tttcttaa 129  Q
    ||||||||    
T  9456309 tttcttaa 9456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 3441218 - 3441326
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| ||||||| |||||||| | |||||| || |||| |||||||| |||||||||||  |||||| ||||||| | ||||| ||| |||||||||    
T  3441218 aaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatgtttctatctttaa 3441317  T
Q  122 tttcttaac 130  Q
    ||| |||||    
T  3441318 ttttttaac 3441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 10068289 - 10068183
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| ||  |||||| ||  ||||| ||||||||| ||| ||||     
T  10068289 aaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatgaaatgcacaa--tccaataaaatatttctatatttag 10068192  T
Q  122 tttcttaac 130  Q
    |||||||||    
T  10068191 tttcttaac 10068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 25070402 - 25070494
Alignment:
Q  38 cataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||  ||| || |||||  || ||||| ||| |||||||| ||| |||||    
T  25070402 cataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatgtttatatctttagttttttaac 25070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 10483415 - 10483464
Alignment:
Q  21 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaa 70  Q
    |||||||||||||||| |||||||| |||||||| || |||| |||||||    
T  10483415 gaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaa 10483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 3067606 - 3067713
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||      
T  3067606 aaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatgtttctatctttgg 3067705  T
Q  122 tttcttaa 129  Q
    ||||||||    
T  3067706 tttcttaa 3067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 5050533 - 5050426
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| |||||||||||||||||||| ||  | ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||      
T  5050533 aaaaatagaattaaatcataaattatgcctcaagaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatgtttttatctttgg 5050434  T
Q  122 tttcttaa 129  Q
    ||||||||    
T  5050433 tttcttaa 5050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 4059118 - 4059206
Alignment:
Q  30 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctt 118  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||| || |||||| || ||||| ||||||||||    
T  4059118 aattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatgtttttatctt 4059206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 31040356 - 31040283
Alignment:
Q  56 aagataaaattttaaatttctaaaatattga-atgcataatttccaacaaaatatttttatctttaatttctta 128  Q
    ||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  31040356 aagataagattttaaatttctaaaacattaatatgcataatttccaataaaatatttttatatttaatttctta 31040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 43967986 - 43968077
Alignment:
Q  39 ataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 130  Q
    |||||||||||||||| ||||||| |||| |||||| || |||||| |||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaac 43968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 18371248 - 18371146
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||| |||||||||  ||||||| | |||| | || |||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||| |||||||||    
T  18371248 aaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaatatttctatctttaa 18371149  T
Q  122 ttt 124  Q
    |||    
T  18371148 ttt 18371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 36622116 - 36622186
Alignment:
Q  56 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttct 126  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||| |||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatgtttatatgtttactttct 36622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 45891904 - 45891795
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtctt-gataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 120  Q
    |||||| |||||||||||||| || |||||| || || |||| ||||||||||| ||  | |||||||||| ||| ||||||||||| ||| || ||||     
T  45891904 aaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaacaaaatgtttctaactttg 45891805  T
Q  121 atttcttaac 130  Q
     |||||||||    
T  45891804 gtttcttaac 45891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 25808484 - 25808592
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||      
T  25808484 aaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaatatttttatctttgg 25808583  T
Q  122 tttcttaac 130  Q
    |||||||||    
T  25808584 tttcttaac 25808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 46298648 - 46298512
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    |||||| |||||||| |||||||  |||||||| ||||||| |||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||      
T  46298648 aaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttgg 46298549  T
Q  122 tttcttaacctttgctttcaggacataagttagcatt 158  Q
    ||||||||| | ||  || ||||||||||||||||||    
T  46298548 tttcttaacttgtgtcttaaggacataagttagcatt 46298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 31501054 - 31501162
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| ||||||||||||| || ||| |||| ||||||| |||||||||||||| || ||| |||||| |||||||||||| || ||| ||||||| |    
T  31501054 aaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatttctagaacattaaatgcacaatttccaacaatatgtttctatctttga 31501153  T
Q  122 tttcttaac 130  Q
    ||| |||||    
T  31501154 ttttttaac 31501162  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 19339997 - 19339915
Alignment:
Q  47 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  19339997 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 19339915  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 49423448 - 49423341
Alignment:
Q  23 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 122  Q
    ||||| |||||||| |||||||  | |||| | ||||||| ||||||||||| ||||| ||  |||||| ||||| ||| ||||||||||||| ||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaatatttttatgtttaat 49423349  T
Q  123 ttcttaac 130  Q
    || |||||    
T  49423348 ttattaac 49423341  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 23392714 - 23392823
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaatttt-aaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 120  Q
    |||||||||||||||  ||||||| | |||| | || |||| ||||| ||| || ||||||||| |||||| |||||  || |||||||||  || ||||    
T  23392714 aaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaataaaatatttcaattttta 23392813  T
Q  121 atttcttaac 130  Q
    ||||||||||    
T  23392814 atttcttaac 23392823  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 51540817 - 51540737
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaa-tttctaaaatattgaatgcataatttccaa 101  Q
    ||||||||||||||| ||||| || || ||| | || ||||||||||||| ||| ||||||| ||||| || |||||||||    
T  51540817 aaaaatggaattaaaacataagttttgacttaacaaaataaaattttaaactttttaaaataatgaatacacaatttccaa 51540737  T

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Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 2126184 - 2126287
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||||||||||||||||||| ||||||||| || ||||  |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||     
T  2126184 aaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaatatttctatctttag 2126283  T
Q  122 tttc 125  Q
    ||||    
T  2126284 tttc 2126287  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 11152279 - 11152190
Alignment:
Q  40 taaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  11152279 taaattatgtcttgagaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatattttcatctttgatttcttaa 11152190  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 22348730 - 22348792
Alignment:
Q  65 ttttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 127  Q
    ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| |||| ||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatatttagtttctt 22348792  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 22345686 - 22345757
Alignment:
Q  56 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 127  Q
    |||||||| |||||||| | |||||||||||||||| |||||| || |||||| ||  || |||||||||||    
T  22345686 aagataaatttttaaatgtttaaaatattgaatgcacaatttcaaagaaaatacttaaatatttaatttctt 22345757  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 35075954 - 35075847
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaac-aaaatatttttatcttta 120  Q
    |||||| |||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  35075954 aaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatattgaatgcacaattttcaacaaaaatgtttatatcttta 35075855  T
Q  121 atttctta 128  Q
     |||||||    
T  35075854 gtttctta 35075847  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 31559096 - 31559181
Alignment:
Q  34 aaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 119  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatgtttctatcttt 31559181  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 5150888 - 5150835
Alignment:
Q  77 aaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 130  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||  ||||||||    
T  5150888 aaaatattgaatgcataattttcaagaaaatattttaatctttagcttcttaac 5150835  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 10020829 - 10020725
Alignment:
Q  23 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 122  Q
    |||||||||||||| || ||||  |||||||| || ||||| |||||||||||||||| || ||||| |  |||||   |||||||||| ||| ||||||    
T  10020829 aaaatggaattaaaacaaaaatattgtcttgaaaatataaatttttaaatttctaaaacatagaatgaacgatttc---caaaatatttctatatttaat 10020733  T
Q  123 ttcttaac 130  Q
    || |||||    
T  10020732 ttattaac 10020725  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 7802090 - 7802030
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatat 83  Q
    |||||||||||||||    ||||| |||||| | ||||||||||||||||||||||||||||    
T  7802090 aaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatat 7802030  T

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Target: scaffold0402 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 3060 - 2978
Alignment:
Q  47 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 129  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  3060 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 2978  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 473 - 365
Alignment:
Q  22 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 121  Q
    ||||||| |||||||  ||||||| | |||| | || |||| |||||||| || ||||||||| |||||| |||||  ||||||||||||  || |||||    
T  473 aaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattttgaacaaaatatttcaatttttaa 374  T
Q  122 tttcttaac 130  Q
    | |||||||    
T  373 tatcttaac 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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