View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3987_low_2 (Length: 227)
Name: NF3987_low_2
Description: NF3987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3987_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 49151022 - 49150809
Alignment:
| Q |
14 |
caagttacctatgtcgaacaactccgcttcaaatatttggcattgaacgtgagaggatacttattaatgaagaaaactttcatcttacaagtagattttg |
113 |
Q |
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| T |
49151022 |
caagttacctatgtcgaacaactccgctttaaatatttgacattgaacgtgagagaatatttattaatgaataaaactttcatcttacaagcagatttag |
49150923 |
T |
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| Q |
114 |
taagaacgaattagactccactctaatttctaatatatgttttgtttctgggacaaagatatcaattaacaagcttctttacaattaattaacaaactac |
213 |
Q |
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| T |
49150922 |
taagaacgaattagactccactctaatttctaatatatattttgtttctgggacaaagatatcaattaacaagcttctttacaattaattaacaaactac |
49150823 |
T |
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| Q |
214 |
tattcaagcatgat |
227 |
Q |
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| T |
49150822 |
tattcaagcatgat |
49150809 |
T |
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