View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3987_low_3 (Length: 214)
Name: NF3987_low_3
Description: NF3987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3987_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 38541022 - 38540858
Alignment:
| Q |
29 |
aaaccgatagacatttgcatagttttttaaagtaatcatataataaaacataaaattcactaaattgtattaggtaaattataattctagtaaatgtaca |
128 |
Q |
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| T |
38541022 |
aaaccgatagacatttgcatagttttttaaagtaatcatataataaaacataaaattcactaaattgtattaggtaaattataattctagtaaatgtaca |
38540923 |
T |
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| Q |
129 |
tgttgaaaataaaataagaattgcaatgtgtaggagtagtactagagaacattatatcgagagag |
193 |
Q |
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| T |
38540922 |
tgttgaaaataaaataagaattgcaatgtgtaggagtagtactagagaccattatatcgagagag |
38540858 |
T |
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