View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3988_high_2 (Length: 448)
Name: NF3988_high_2
Description: NF3988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3988_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 5173051 - 5173472
Alignment:
| Q |
19 |
cttcattcatctgtgataggcaataagtagctgataatgatgagtctttctttccagaacaattctgagttgattttgtaaccatgctaccagaaggaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173051 |
cttcattcatctgtgataggcaataagtagctgataatgatgagtctttctttccagaacaattctgagttgattttgtaaccatgctaccagaaggaaa |
5173150 |
T |
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| Q |
119 |
tgaaaatgaaaatttcccttcttttccgtcaaaaagttttgccttgagtgcaccaagaagaccgtgttctgaacctgaacccgagtcactgacatcttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173151 |
tgaaaatgaaaatttcccttcttttccgtcaaaaagttttgccttgagtgcaccaagaagaccgtgttctgaacctgaacccgagtcactgacatcttca |
5173250 |
T |
|
| Q |
219 |
aaagaaaaaggttctgtattctctagcatgaatttggaaccagcaccgcgctttgaacctccactaccatttgtttcagattctggcaattcaaagttgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173251 |
aaagaaaaaggttctgtattctctagcatgaatttggaaccagcaccgcgctttgaacctccactaccatttgtttcagattctggcaattcaaagttgg |
5173350 |
T |
|
| Q |
319 |
ttcttgcattagcacctctcaaagctctagcagcagtgtcataagcacgagctgcctcttcggctgagtcgaatgttccaagccaaagcctaactttctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173351 |
ttcttgcattagcacctctcaaagctctagcagcagtgtcataagcacgagctgcctcttcggctgagtcgaatgttccaagccaaagcctaactttctg |
5173450 |
T |
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| Q |
419 |
tagtgagtctttgatctctgct |
440 |
Q |
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|||||||||||||||||||||| |
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| T |
5173451 |
tagtgagtctttgatctctgct |
5173472 |
T |
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